ndufa4l (ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867)


Basic Information

Item Value
gene id ndufa4l
gene name ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8707954 ~ 8713318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU246334
TCTGTACTTGAAGTGACGACACCTCGTTGCTAGTCGCGCTAGCCTAATCGCTCAGTGTGACTCTCGACAAGGCCGCAGTTAAACGCGTTACCGCTGTGTGAAATTTCCTGGGACAGCTACAATGTTCAGCACAGTTAGCCGTCAGCTGAAAAGCCATCCGGCTCTGATCCCGCTCTTTATCTTCATCGGAGGCGGCTGTACGATGTCTCTGTCTTACTTGGCTAGACTGGCTTTCCGTAACCCGGACGTATGCTGGGACAAAGCGAACAACCCCGAACCCTGGAACAAACTGGGGCCCAATGATCAGTACAAGTTTTTCTCCGTGAACATGGACTACAGCAAACTGAAGAAGGATCGGCCAGACTTCTAAATGCACCGAATCTGGAGAAGCCTCCTGGCCGCACAATGCTGGACCATAGActtgagaaaaatgaaaaagaagcgATCTGTGCATTTACCCCTCCAGCATCCTCCAACCCAACTTGACAAATGAGGCTAATCCGTACAATTTTGAATCTAGTCATTTGccaagaccttttttttttttttttaaattacttgactaaattttgcttgtttttattttctcattctttgTGGTTGTCTACAGCAACACAATAAAGGAGGCT
>XM_026916037.2
CCTCGTTGCTAGTCGCGCTAGCCTAATCGCTCAGTGTGACTCTCGACAAGGCCGCAGTTAAACGCGTTACCGCTGTGTGAAATTTCCTGGGACAGCTACAATGTTCAGCACAGTTAGCCGTCAGCTGAAAAGCCATCCGGCTCTGATCCCGCTCTTTATCTTCATCGGAGGCGGCTGTACGATGTCTCTGTCTTACTTGGCTAGACTGGCTTTCCGTAACCCGGACGTATGCTGGGACAAAGCGAACAACCCCGAACCCTGGAACAAACTGGGGCCCAATGATCAGTACAAGTTTTTCTCCGTGAACATGGACTACAGCAAACTGAAGAAGGATCGGCCAGACTTCTAAATGCACCGAATCTGGAGAAGCCTCCTGGCCGCACAATGCTGGACCATAGActtgagaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246334 True 629 TUCP 0.46 4 8707954 8713318
XM_026916037.2 False 410 mRNA 0.52 4 8708152 8713297

Neighbor

gene id symbol gene type direction distance location
spop spop,LOC107754841,LOC100710366 coding downstream 47833 8566771 ~ 8660121 (-)
ubtf ubtf,LOC102797579,LOC107660581 coding downstream 459165 8238150 ~ 8248789 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding downstream 471332 8226297 ~ 8236622 (-)
si:busm1-163l24.3 LOC108276929 coding downstream 498178 8204060 ~ 8209776 (-)
si:busm1-163l24.4 LOC108277007 coding downstream 504601 8201765 ~ 8203353 (-)
slc35b1 slc35b1,LOC107590797,LOC107684645 coding upstream 3006 8716324 ~ 8728598 (-)
fam117aa fam117a,LOC108413398,LOC101073443 coding upstream 16647 8729965 ~ 8745043 (-)
rundc3aa rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642 coding upstream 34391 8747709 ~ 8762587 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding upstream 51361 8764679 ~ 8779068 (-)
nlk1 nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874 coding upstream 70081 8783399 ~ 8793415 (-)
G208016 NA non-coding downstream 58591 8574635 ~ 8649363 (-)
G207895 NA non-coding downstream 173242 8534503 ~ 8534712 (-)
G207860 NA non-coding downstream 214913 8492815 ~ 8493041 (-)
G207793 LOC107737118,LOC107558774 non-coding downstream 275693 8431998 ~ 8432261 (-)
G207732 NA non-coding downstream 349880 8353710 ~ 8358074 (-)
G208062 NA non-coding upstream 147245 8860563 ~ 8873502 (-)
G208063 NA non-coding upstream 158658 8871976 ~ 8914559 (-)
G208097 NA non-coding upstream 242124 8955442 ~ 8955655 (-)
G208098 asphd1 non-coding upstream 242548 8955866 ~ 8956397 (-)
G208099 NA non-coding upstream 243943 8957261 ~ 8958211 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 418146 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 423362 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 440316 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1002462 7559767 ~ 7705492 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other downstream 1276842 7425717 ~ 7431112 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 399648 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 483178 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 696486 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 751013 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 1016533 9729851 ~ 9732566 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location