G208062


Basic Information

Item Value
gene id G208062
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8860563 ~ 8873502 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU246390
TCATGGCTCTTGTCAGCCCAATAAtttactaagacactttttgttgttttacttttaatgtGTCATATACGTATATAGACTCTCAGGTACATATAGTCTGCAACATGGACAGGGGGTACAAGAGAACAGACTGGAGCAACATTCTGCAGATAGCCAACTCGGCTTTCTCTCTATGGACTTTACCAAAAAAAGCTGAGCTACTCGAGGTAAGTACTTAAGGTAAGTAAGTAAAAGCTACAGATAAAAGCAAAGTATTGTAGCTAAATAAATAGCTAGaatacagtaatgttagctCACTCCTTTCGTTTGTGGATCTTTAAACTAAACTTTTAGGTTTTAGCTAAAAGCTAAGTATGGATTTTCTGCAAGACATAGATAAAATACTGTGATGTTAGCTTACTCCTTTcatttgtgcttgtgtgtataaTTTGACTATCATCACTAGAATatagagagggaggggaggatGGGGATTacggagaaagaaaggaacagatAGAAGAGGCTGGGGGAGTCACGATTGCTTTTTGATGTAACAAATCCAGGTTGATTGTTGCTGATCTTGCTGTTAATCCAGTTTTGGTACTGAGACACTCTGGTGTACACACCAGGGATCTTAGGTAAAGCGCAGCCATAGCCAAAGCTCACAATCCCAGCCTGAACCCATGTTCCATTGGACTTGACCACCAGTGGACCTCCAGAATCACCCTGCATGGACAACAAGCTGTTAGCTGCATGTCTCATGTTCTTAAAACAAGACACTGTACCAAATTAATATGGCAGGTTTTAGATTTCTTACCTGGCATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246390 True 808 lncRNA 0.40 2 8860563 8873502

Neighbor

gene id symbol gene type direction distance location
taok2a taok2,LOC108278428,LOC107590788,LOC107710882 coding downstream 25827 8811408 ~ 8834736 (-)
cdipt cdipt,LOC107710884,LOC107582865,LOC107678876,LOC107684638 coding downstream 51582 8805242 ~ 8808981 (-)
LOC113528536 LOC108278430,LOC108410602,LOC100535691,LOC107710886,LOC107678873,LOC107582858 coding downstream 57708 8795520 ~ 8802855 (-)
nlk1 nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874 coding downstream 67148 8783399 ~ 8793415 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding downstream 81495 8764679 ~ 8779068 (-)
hirip3 hirip3,LOC107689078,LOC107552470,LOC107739380 coding upstream 48007 8921509 ~ 8927911 (-)
kctd13 kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045 coding upstream 56109 8929611 ~ 8936540 (-)
sez6l2 sez6l2,LOC107660756 coding upstream 64061 8937563 ~ 8953319 (-)
pitpnbl pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658 coding upstream 99785 8973287 ~ 8983377 (-)
lat LOC108257259 coding upstream 149044 9022546 ~ 9032032 (-)
G208016 NA non-coding downstream 211200 8574635 ~ 8649363 (-)
G207895 NA non-coding downstream 325851 8534503 ~ 8534712 (-)
G207860 NA non-coding downstream 367522 8492815 ~ 8493041 (-)
G207793 LOC107737118,LOC107558774 non-coding downstream 428302 8431998 ~ 8432261 (-)
G207732 NA non-coding downstream 502489 8353710 ~ 8358074 (-)
G208097 NA non-coding upstream 81940 8955442 ~ 8955655 (-)
G208098 asphd1 non-coding upstream 82364 8955866 ~ 8956397 (-)
G208099 NA non-coding upstream 83759 8957261 ~ 8958211 (-)
G208145 NA non-coding upstream 133498 9007000 ~ 9007259 (-)
G208151 NA non-coding upstream 151259 9024761 ~ 9024983 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 147245 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 570755 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 575971 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 592925 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1155071 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 239464 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 322994 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 536302 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 590829 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 856349 9729851 ~ 9732566 (-)

Expression


Co-expression Network