G208098 (asphd1)


Basic Information

Item Value
gene id G208098
gene name asphd1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8955866 ~ 8956397 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU246438
CAGATGGCACCGGAGGCGTGTGTTAGTTGGCCCATAGGTTCCCCCCAGTGAGGCCCCAGGGCCCAGAAGCCAGAAACCTGCTGAGCCAAGGGAGTTACTGCTGATAAAAGTTCTGAGGGAGAGGAGGGTACGGTACGTACAGGGACATGCGCGGCAATTACttgccacacacactccagcattGTAGAGTGGGAACAGTGCCTGACCCTGTGAAGTCAAGTGACAAACACAAACGTGATTTACGAATACATGAACAAGGCAGTGTTTTCACTAATCACCAGTGAAGCTTTTTTGATGAATTTACATGTAAGGTGAAGCAAGGCAGGAAACCTCTCAGTGGTGCAGTGCAGATATTGATTTGAGATAGTGAGTAGGTaagtgaaagtgagtgagtgagagcgAACAGGAGAGAGATTAAgagtgagagagcaagagatgctactaaataaatattcaatacaTATTTAGTAAATCTCAGTGTTGCTACAAAATCACATTTCTAGAGGCTTAAACCTGGAACTTCGGATGTCTG

Function

symbol description
asphd1 Predicted to enable dioxygenase activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain. Orthologous to human ASPHD1 (aspartate beta-hydroxylase domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246438 True 532 lncRNA 0.46 1 8955866 8956397

Neighbor

gene id symbol gene type direction distance location
sez6l2 sez6l2,LOC107660756 coding downstream 2547 8937563 ~ 8953319 (-)
kctd13 kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045 coding downstream 19326 8929611 ~ 8936540 (-)
hirip3 hirip3,LOC107689078,LOC107552470,LOC107739380 coding downstream 27955 8921509 ~ 8927911 (-)
taok2a taok2,LOC108278428,LOC107590788,LOC107710882 coding downstream 121130 8811408 ~ 8834736 (-)
cdipt cdipt,LOC107710884,LOC107582865,LOC107678876,LOC107684638 coding downstream 146885 8805242 ~ 8808981 (-)
pitpnbl pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658 coding upstream 16890 8973287 ~ 8983377 (-)
lat LOC108257259 coding upstream 66149 9022546 ~ 9032032 (-)
spns1 spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070 coding upstream 76447 9032844 ~ 9044136 (-)
nfatc2ip NA coding upstream 89248 9045645 ~ 9049091 (-)
sgf29 sgf29 coding upstream 93376 9049773 ~ 9056443 (-)
G208097 NA non-coding downstream 211 8955442 ~ 8955655 (-)
G208063 NA non-coding downstream 41307 8871976 ~ 8914559 (-)
G208062 NA non-coding downstream 82364 8860563 ~ 8873502 (-)
G208016 NA non-coding downstream 306503 8574635 ~ 8649363 (-)
G207895 NA non-coding downstream 421154 8534503 ~ 8534712 (-)
G208099 NA non-coding upstream 864 8957261 ~ 8958211 (-)
G208145 NA non-coding upstream 50603 9007000 ~ 9007259 (-)
G208151 NA non-coding upstream 68364 9024761 ~ 9024983 (-)
G208153 NA non-coding upstream 74128 9030525 ~ 9030978 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding upstream 105183 9061580 ~ 9063507 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 242548 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 666058 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 671274 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 688228 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1250374 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 156569 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 240099 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 453407 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 507934 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 773454 9729851 ~ 9732566 (-)

Expression


Co-expression Network