G208105 (LOC107552474,LOC107739385,LOC107754658)


Basic Information

Item Value
gene id G208105
gene name LOC107552474,LOC107739385,LOC107754658
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8982027 ~ 8983311 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU246445
CTGTGTATGTGGTAGATTTTGTGGGTGTACTGGCCCTTCTCCCCTTCCTTCTCGTACGGTTCATTTCGGAGGACTTCAATCCCTTCGCCCCCACCTGTGTTGTTCTTACTTGCCTCCGCAACCGAGTACAGCTGGCCAACCTGGTACTCTTCTACTGAGCATGGCAACACCACTTGATATTCTTTGACGAGTACCATGCCGAAGCCGCACAGAACCGGACATCCAACAAGAAGCTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246445 True 238 lncRNA 0.52 3 8982027 8983311

Neighbor

gene id symbol gene type direction distance location
cabp5b LOC108274992,LOC108410601,LOC107568513,LOC107552460,LOC107755172,LOC107689105,LOC107661251 coding upstream 15747 8962148 ~ 8966280 (+)
LOC117598844 NA coding upstream 60534 8916948 ~ 8921493 (+)
LOC113528195 NA coding upstream 66704 8909670 ~ 8915323 (+)
LOC113528196 NA coding upstream 77363 8902728 ~ 8904664 (+)
LOC113528069 NA coding upstream 79350 8896618 ~ 8902677 (+)
LOC113528379 LOC108274113 coding downstream 3261 8986572 ~ 8990189 (+)
sh2b1 sh2b1,LOC108410604,LOC102776240,LOC104967735 coding downstream 10207 8993518 ~ 9006845 (+)
atxn2l atxn2l coding downstream 26274 9009585 ~ 9021533 (+)
doc2a doc2a,LOC107739394,LOC107552479,LOC107689068,LOC107754561,LOC107567185 coding downstream 91658 9074969 ~ 9099241 (+)
baiap2l2a LOC108258393 coding downstream 249692 9233003 ~ 9245784 (+)
G208004 NA non-coding upstream 107735 8851803 ~ 8874292 (+)
G207932 NA non-coding upstream 176594 8804488 ~ 8805433 (+)
LOC113528294 zwi non-coding upstream 209551 8752715 ~ 8772476 (+)
G207980 fam57b non-coding upstream 214122 8764526 ~ 8767905 (+)
G207927 NA non-coding upstream 264750 8692721 ~ 8717277 (+)
G208120 NA non-coding downstream 38864 9022175 ~ 9022947 (+)
G208122 NA non-coding downstream 43978 9027289 ~ 9027537 (+)
G208124 NA non-coding downstream 46360 9029671 ~ 9029875 (+)
G208125 NA non-coding downstream 48082 9031393 ~ 9031921 (+)
G208132 NA non-coding downstream 58483 9041794 ~ 9044122 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 23927 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 973616 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 1128518 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 1660062 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 1850060 7108178 ~ 7131967 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 78252 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 960995 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 1366091 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 2296769 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 2583808 11567119 ~ 11577823 (+)

Expression


Co-expression Network