G208122


Basic Information

Item Value
gene id G208122
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9027289 ~ 9027537 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU246492
AAatttttgtggttaaaaaaaaagaaaaaaaagtcaagctTGCTTTTTGCCCAATAACTGGCAATGAAGCACGTGCAGCGACGCAAAAGCAGTTAGGTGCACTTTCACCCCATTAAGTCTAGCTGGaaaaatgcacacactcattcatacctaggggcattTATCTTAGTCAATTCACCTGCTGGTATGTTTTTGAGAAGTgagagaaaactggagaacccagaggaacccacatgaacatagcgagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246492 True 249 lncRNA 0.41 1 9027289 9027537

Neighbor

gene id symbol gene type direction distance location
atxn2l atxn2l coding upstream 5756 9009585 ~ 9021533 (+)
sh2b1 sh2b1,LOC108410604,LOC102776240,LOC104967735 coding upstream 20444 8993518 ~ 9006845 (+)
LOC113528379 LOC108274113 coding upstream 37100 8986572 ~ 8990189 (+)
cabp5b LOC108274992,LOC108410601,LOC107568513,LOC107552460,LOC107755172,LOC107689105,LOC107661251 coding upstream 61009 8962148 ~ 8966280 (+)
LOC117598844 NA coding upstream 105796 8916948 ~ 8921493 (+)
doc2a doc2a,LOC107739394,LOC107552479,LOC107689068,LOC107754561,LOC107567185 coding downstream 47432 9074969 ~ 9099241 (+)
baiap2l2a LOC108258393 coding downstream 205466 9233003 ~ 9245784 (+)
csf2rb NA coding downstream 272564 9300101 ~ 9312782 (+)
si:dkey-110g7.8 LOC108259846 coding downstream 362887 9390424 ~ 9400838 (+)
nfe2l1a LOC108279857 coding downstream 450274 9477811 ~ 9488541 (+)
G208120 NA non-coding upstream 4342 9022175 ~ 9022947 (+)
G208105 LOC107552474,LOC107739385,LOC107754658 non-coding upstream 43978 8982027 ~ 8983311 (+)
G208004 NA non-coding upstream 152997 8851803 ~ 8874292 (+)
G207932 NA non-coding upstream 221856 8804488 ~ 8805433 (+)
LOC113528294 zwi non-coding upstream 254813 8752715 ~ 8772476 (+)
G208124 NA non-coding downstream 2134 9029671 ~ 9029875 (+)
G208125 NA non-coding downstream 3856 9031393 ~ 9031921 (+)
G208132 NA non-coding downstream 14257 9041794 ~ 9044122 (+)
G208133 NA non-coding downstream 18108 9045645 ~ 9047416 (+)
G208197 LOC108260010,LOC108274064 non-coding downstream 87651 9115188 ~ 9125790 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 69189 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 1018878 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 1173780 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 1705324 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 1895322 7108178 ~ 7131967 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 34026 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 916769 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 1321865 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 2252543 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 2539582 11567119 ~ 11577823 (+)

Expression


Co-expression Network