G208153


Basic Information

Item Value
gene id G208153
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9030525 ~ 9030978 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU246531
GTAACACTCAACAGTGTGGGCACTCAGTAAGCATTGATTCAGATTGGCCTTGGCATTTAGAAATGCTCAGGGTGGCACAAAATGGAGGTGGATATGTTGCGGCCCTGGTTTTGGGGTTTGGGTGAAAGAGGCCGTGCAGATGTAGGTGTAACAGAGAGGCCTAGGCCGAGTCAATTTCTTGtgatgtacttttttttctcctttttctcatcTAACTGCAAAATACAGGAAATCCGTTTCCTGGCAATGAACGCACTCACATGCATATAGACACAGCAGCATAGGCTGAGAACTGCAATGGCACTGATGCCACGAGATTAATTAGATTATGAAACTGTTAAGGTGTAACTACAGTAATTTTGTCTTCAGATATTGATGTCGCTTCATTGCATGTATTTGACTAGAAAGGTTTACATGAAAAAGTACGTAAACCCCCCAAAAAGAAATATTCGTg

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction
ko05412 Arrhythmogenic right ventricular cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU246531 True 454 lncRNA 0.42 1 9030525 9030978

Neighbor

gene id symbol gene type direction distance location
pitpnbl pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658 coding downstream 47148 8973287 ~ 8983377 (-)
sez6l2 sez6l2,LOC107660756 coding downstream 77206 8937563 ~ 8953319 (-)
kctd13 kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045 coding downstream 93985 8929611 ~ 8936540 (-)
hirip3 hirip3,LOC107689078,LOC107552470,LOC107739380 coding downstream 102614 8921509 ~ 8927911 (-)
taok2a taok2,LOC108278428,LOC107590788,LOC107710882 coding downstream 195789 8811408 ~ 8834736 (-)
spns1 spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070 coding upstream 1866 9032844 ~ 9044136 (-)
nfatc2ip NA coding upstream 14667 9045645 ~ 9049091 (-)
sgf29 sgf29 coding upstream 18795 9049773 ~ 9056443 (-)
si:dkey-93n13.2 LOC108274046 coding upstream 73323 9104301 ~ 9120154 (-)
zgc:66443 LOC108261131 coding upstream 113596 9144574 ~ 9152008 (-)
G208151 NA non-coding downstream 5542 9024761 ~ 9024983 (-)
G208145 NA non-coding downstream 23266 9007000 ~ 9007259 (-)
G208099 NA non-coding downstream 72314 8957261 ~ 8958211 (-)
G208098 asphd1 non-coding downstream 74128 8955866 ~ 8956397 (-)
G208097 NA non-coding downstream 74870 8955442 ~ 8955655 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding upstream 30602 9061580 ~ 9063507 (-)
G208189 NA non-coding upstream 71933 9102911 ~ 9103126 (-)
LOC117598997 NA non-coding upstream 411008 9441986 ~ 9446104 (-)
G208391 NA non-coding upstream 463645 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 715518 9746496 ~ 9748039 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 317207 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 740717 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 745933 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 762887 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1325033 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 81988 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 165518 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 378826 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 433353 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 698873 9729851 ~ 9732566 (-)

Expression


Co-expression Network