G208189


Basic Information

Item Value
gene id G208189
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9102911 ~ 9103126 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU246570
ATTTGACTTCAGAAGTGAAGTGTTCTTAAATTGATCAGTGGTAATACAGGTCATTGCTATTTCTTGGAACCATCATTTTCACGGAGCTCACAGCGCTGCAGCACTGATTCTGTCTATAACAAGTTCAGCAGAGGGTGTACTTTCCACAGCAgctgagcttttttttaacttactaCAAGTGCTAACGTTGGTCCTGGCAGCCTCATTAAATGTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246570 True 216 lncRNA 0.42 1 9102911 9103126

Neighbor

gene id symbol gene type direction distance location
sgf29 sgf29 coding downstream 46468 9049773 ~ 9056443 (-)
nfatc2ip NA coding downstream 53820 9045645 ~ 9049091 (-)
spns1 spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070 coding downstream 58775 9032844 ~ 9044136 (-)
lat LOC108257259 coding downstream 70879 9022546 ~ 9032032 (-)
pitpnbl pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658 coding downstream 119534 8973287 ~ 8983377 (-)
si:dkey-93n13.2 LOC108274046 coding upstream 1175 9104301 ~ 9120154 (-)
zgc:66443 LOC108261131 coding upstream 41448 9144574 ~ 9152008 (-)
LOC113527879 LOC108274494,LOC107552447 coding upstream 55250 9158376 ~ 9166233 (-)
mvp mvp,LOC107739398 coding upstream 65256 9168382 ~ 9184513 (-)
trnav-cac_10 NA coding upstream 84394 9187520 ~ 9187592 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 39404 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 71933 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 77928 9024761 ~ 9024983 (-)
G208145 NA non-coding downstream 95652 9007000 ~ 9007259 (-)
G208099 NA non-coding downstream 144700 8957261 ~ 8958211 (-)
LOC117598997 NA non-coding upstream 338860 9441986 ~ 9446104 (-)
G208391 NA non-coding upstream 391497 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 643370 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 726501 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 734124 9837250 ~ 9838412 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 389593 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 813103 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 818319 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 835273 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1397419 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 9840 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 93370 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 306678 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 361205 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 626725 9729851 ~ 9732566 (-)

Expression


Co-expression Network