G208415 (hoxb9,hoxb9a,LOC107662432,LOC107585091)


Basic Information

Item Value
gene id G208415
gene name hoxb9,hoxb9a,LOC107662432,LOC107585091
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9737009 ~ 9738866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU246862
ttctgtgtttattcagTAGGAACggtttatgttaatgaatgtggagTATTGGTTTATCCTTtgtaaaaaatatacatcagtTATAGACGCCAATGAGAGGAACTCAGACAGTGATCCGTGTAAACTTGTAATATgggtctgtgtctgtctgtcagtttgtCGGTGGTTGTGACACCGTTTGAGGAAAACTGGAGAAATTCCACACCTCAAGGGAAGTTGAAGACAGACGCCCACGCGACTACAGAAAGGTCCATTCGGAGACTATTTCTTCACAAGCAAAACAATGCAATGTTGAGCAAACGTATACTTTACAACATAATACTTTTGTGTTAACACAGATCTCAAAGACTTATGGACAACAATATGTAAACAgtgtctgaaaaaaagaaagaacatttgCTTATTTAAGTAGGCTATAAAATCTCCTCTTTTtatacaatgtaaaaaaaaaacattccactgaaaagaaaagcaataaCATTTGGAATAAATTATAACTATCATTCTAATACTACACAAGGAAGAGCTTAGCATTGTACTACCTAATATCAAAATCAAGTAAAAGGTAACTAAAACTTTACAAGGCATGCGCTAAAGCATGTAAACTTTTACAACCACTGCTAGTTTAAAACCGAAATGTTACTCACAAGCTAgctacatacatatacacacatccagCAGATACAGTCTATAAGTTAATTCCTCCTTCATTTGATAACTGGGGCAACAATTAAGATTAAACGGAGTAACGTAGTATACAATTAAGGTTTAAATGTTGCTAGACCTTGCTTTAAAAAAGCCTTGCTTTATATAGTTGCTTCACGTCGAAAACTTggaatattacattacattaatatgGCATTATCTACTACAAAGTCTGCAACACAGTTTATTCTTCAAATCCTTCAATGTATGACTCTAGGTCGATCCAAACCATTAAGAAAAGCAAGACGAATTAGGCTGCTATAGATTTAAACTTATTCATGGAGACATATTCAGAGGAAAGACCAATTTTCTTCCAGTATCAGTATCCTTGATTAAAATTTAACAAATGCAAAAGGTAACCTCGAAGCATTTTATCCATTAAGGAATGCATATCCGAATATTTGTCACGgcacaattaaaataatttcccttaccacaagaaataataataataataataataataataataataataataataattttcagttttgttatAGGAATACGTTGTAACCGCACTTATTGCCattgaataaaataacattgtcCACAAAATGTCTACAAAGTAAAGTTTCTTtcaattaaaacataaatatgcaaGTACCTGTacttatatttctgtttataaagTAAAGTGGAAAGGAAATTCAAAACAGAGGACAAGGAGTAGGTATACAGCCTACTCATGTATATTACATGATTTTCTTTTGACGTAGTTTTATAGTTGGTTACTAGTGTTCTTGCCCTTCTTCAAGTAGCTTTCTAAAAAGAATACTCAGGTTTTAGTGTTGATCTGCATCtcagaatataaaaaatgtgtagCACAGGCTGCAAACATCTTGTATTACTGTCCAGAGGTCAGCATAATTGTGATAAAAGGGGTAAAGGATGGGCACCCACACTTGTCCATTTATTCCTTGGACTGGTCCttattcattttcttcattttcatcctTCGGTTTTGGAACCAAATTTTAACTTGCCGCTCCGTCAAGTTCAGCAAGCGCGCTACCTCGTGTCGCCGGTCCCGGGTAAGATACATGTTGAAGAGGAATTCCTTCTCGAGCTCCAGGGTTTGATACTTAGTGTATGGACATCGCTTTTTCCGTGACGAGCGAGCGTGTAACC

Function

symbol description
hoxb9a Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in embryonic skeletal system morphogenesis; regionalization; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in CNS interneuron; paraxial mesoderm; and spinal cord neural tube. Orthologous to human HOXB9 (homeobox B9).
hoxb9 Enables sequence-specific double-stranded DNA binding activity. Involved in cell chemotaxis. Located in nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246862 True 1836 lncRNA 0.35 2 9737009 9738866

Neighbor

gene id symbol gene type direction distance location
nfe2l1a LOC108279857 coding upstream 248468 9477811 ~ 9488541 (+)
si:dkey-110g7.8 LOC108259846 coding upstream 336171 9390424 ~ 9400838 (+)
csf2rb NA coding upstream 424227 9300101 ~ 9312782 (+)
baiap2l2a LOC108258393 coding upstream 491225 9233003 ~ 9245784 (+)
doc2a doc2a,LOC107739394,LOC107552479,LOC107689068,LOC107754561,LOC107567185 coding upstream 637768 9074969 ~ 9099241 (+)
eve1 LOC108275867,LOC108412315 coding downstream 40657 9779523 ~ 9781922 (+)
atp5mc1 atp5g1,LOC108256653,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887 coding downstream 67932 9806798 ~ 9811581 (+)
ube2z ube2z coding downstream 75218 9814084 ~ 9827009 (+)
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107667758,LOC107582884,LOC106607494 coding downstream 102024 9840890 ~ 9879885 (+)
si:dkey-225f5.4 LOC108258433 coding downstream 147918 9886784 ~ 9893496 (+)
G208430 NA non-coding upstream 2962 9732608 ~ 9734047 (+)
G208403 NA non-coding upstream 181195 9555612 ~ 9555814 (+)
G208382 NA non-coding upstream 238960 9495015 ~ 9498049 (+)
G208378 NA non-coding upstream 246275 9485698 ~ 9490734 (+)
G208326 NA non-coding upstream 361382 9374940 ~ 9375627 (+)
G208472 NA non-coding downstream 7419 9746285 ~ 9748010 (+)
G208507 NA non-coding downstream 107218 9846084 ~ 9858882 (+)
G208504 NA non-coding downstream 126111 9864977 ~ 9883127 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding downstream 300543 10039409 ~ 10061965 (+)
G208700 NA non-coding downstream 482417 10221283 ~ 10221539 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 673596 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 778909 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 1728598 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 1883500 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 2415044 7309207 ~ 7321965 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 205440 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 610536 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 1541214 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1828253 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 2310541 12049407 ~ 12086058 (+)

Expression


Co-expression Network