G208613 (msl1)


Basic Information

Item Value
gene id G208613
gene name msl1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9914907 ~ 9917529 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU247137
GTGCTCTTAAGATAGGTCTCCCAAGCCaccgccaccctgaccaggatagcTGCAAATATTTGGGGTGTAGTATAATGCATTCTCAGCGTTTTATATTTGCAAATAAGTCTGCAAACTACACTGATCCCCCACCCCCCTcaccacttcaatattatgggctataaTATTCATGACATCCTAAGTTCAAACTGGGGTGAATagttatgcaaggcactgtagaACAATGTATAACTTACAATCTgatagaaaatgttaaaatgataaaactaaataaatgtgataaaagATATCAATAGCAAATACCAAAGTAGCAACTGGGGGTGAACATTTAATGGGCTGTTTTTATAAACACCACATGCAAAATAGCTATAACTGCTGCCATATAGTGGGCATAAATTACCTGATAAAagaactgaaacacacaaacataattttaagatattttaatacctgaaatattttctttaggCGCATTAGAttatctttcatttatttgcaGAATCAACACTATGTTACAAGATATTACACTATATTGTTTTAGAAGTCACCCATTCACAATGaacagaaatgcaaaaacacTGACTAAATAACATTCTCTTTTAAACTGCATTTGATCATGACGTGAGTTTTGGTCCATACTGCACTTTTAAAAGCTAACTTGCATGGGAAAATACCAAAGCAACCAGAACACAGCAATGTCACATTTTGCAGTGCAACAATGAGTATGAAATTTTGACAGCTCTGCTTTCATCCATCTTGTAGCTGGTGTGCCATTCAGAGTGCCAAACGGGCTTCAGCCAGGAGCAGCTCTTTAAAGACTGAAGGTGCCTTCAGGGCAATCAACTATGTAAAACATTGCCAAGATGATCCTACAGCACACAGAATACAGCACAGGACAGTCGAACTGATTCAGCCTCTTCTTAACATTGTGTGCTCACTCAAAGAGGACTGCTTCACTTGCGGCAGGTCCGATGGGGCGTCTTCTTTTTtttttttttttaatctgtctctCACCTCCATGATATCAACTGCCTTTTTGTCCTCCAGAGGTTCCACAATGCTCTCTCGCCAAGAAGGGACTAAAATGGGAAAAAAGGGACACAAGCCAACAAGAATTACAAAGTTATTTTTTCTGCTGTTATTTTGTTAGATGCCTTTACAATTTGCCTAGATTTTGGGCAATTACATGTCTCCACATTAACATATAGGAGCATTCCCTCACATGCTCAGAGCAAAGCTACATACTATCCTGAATGTCAACCAATTTTTGTTGTTACTGGATCGATATCCTGAACATCCATGAAACCCACCAGGCTTACATTCAAATAGTTTTGATTAGCAttggaaagaaaaatacattttaagacAGGATATAGATTTTAATGGACTAAAAGACATCAAtacttcaaataaataataatctggAAAAAATAATCAAGCAAGCTGCAATaacgtgtgtgatgtgtgttaacTATGTTCAAAGTGCACTCACCAGCAACTGTGTCCTCCTGCACAGGAGACTGATCTCTCCATGGTGAAGGTGGAGGTTGGTGCCAGCAGCAGAGATACATCTCAGTGGTAGCCATGTACGGCAGCTCTTCTGATTCTACAAGGGAGGAACCAGGTGACCTTACCTCAGGCTCCACCTCCTCCTGAGACTCCTCCAGAGCCTGGCTTTCTTTTGGAGCGGGTGCTTTAGTATGCCTACGTTTGGACCTTGACATCGTGGATTCCTGAAAAAGGAATCT

Function

symbol description
msl1 Predicted to enable chromatin binding activity. Involved in histone H4-K16 acetylation. Located in nucleoplasm. Part of MSL complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247137 True 1748 lncRNA 0.39 2 9914907 9917529

Neighbor

gene id symbol gene type direction distance location
nr1d1 nr1d1 coding downstream 10513 9896866 ~ 9904394 (-)
hoxb13a hoxb13,hoxb13a,hoxb13aa,LOC107687788,LOC107662424,LOC107585093,LOC107740673,LOC107582955 coding downstream 144989 9767867 ~ 9769918 (-)
hoxb9a hoxb9,hoxb9a,LOC107662432,LOC107717219,LOC107585091 coding downstream 173574 9737003 ~ 9741333 (-)
hoxb7a hoxb7 coding downstream 186053 9724361 ~ 9728854 (-)
hoxb6a hoxb6a,LOC108278545,LOC108413127,LOC107585042,LOC107582892,LOC107662387 coding downstream 197438 9715010 ~ 9717469 (-)
ppp1r9ba ppp1r9b,LOC108412948 coding upstream 70587 9988116 ~ 10033085 (-)
col1a1a col1a1,LOC108279263,LOC107585052,LOC107740634 coding upstream 124652 10042181 ~ 10061921 (-)
nags nags coding upstream 204857 10122386 ~ 10134023 (-)
mosmoa c17h16orf52,c16orf52.L,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding upstream 229319 10146848 ~ 10185101 (-)
si:ch211-256e16.3 si:ch211-256e16.3,LOC108260968,LOC108412900,LOC107717492,LOC107552129,LOC107674048,LOC106601741 coding upstream 279979 10197508 ~ 10207214 (-)
LOC113528446 NA non-coding downstream 76495 9837250 ~ 9838412 (-)
G208473 NA non-coding downstream 166868 9746496 ~ 9748039 (-)
G208391 NA non-coding downstream 409157 9494623 ~ 9505750 (-)
LOC117598997 NA non-coding downstream 468803 9441986 ~ 9446104 (-)
G208189 NA non-coding downstream 811781 9102911 ~ 9103126 (-)
G208649 NA non-coding upstream 146448 10063977 ~ 10066356 (-)
G208758 NA non-coding upstream 269507 10187036 ~ 10187252 (-)
G208771 NA non-coding upstream 304181 10221710 ~ 10290885 (-)
G208951 NA non-coding upstream 424382 10341911 ~ 10342222 (-)
G208964 lmtk2 non-coding upstream 530207 10447736 ~ 10450540 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 182341 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 440429 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 495323 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 711267 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 772036 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 533195 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1724628 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1782320 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2380247 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 2416325 12333854 ~ 12339269 (-)

Expression


Co-expression Network