G208649


Basic Information

Item Value
gene id G208649
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10063977 ~ 10066356 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU247174
TGCCAATGAACATGCTTTTTTACCAGCACATTGTagtactttaatttttttcttgggAGTTTGGTCCAGGAGTTGATTTGTTTATGAGCAGCGTAACTGCTAAATCTAAAGCAAGGAgaagaacattttcttttcatcaaaCGTTAAAAAATCTAgatgtaatgaattaaaatggaagaaaaatgatcaaatgatcACTATCTCCATATCTTGTCTGTTATTCTCCACATGCCTTTGGAAGTTCTGCAAAAATTCTTTATCATACACATATACTAAGCTGCACTTTTCAGGGTAGAAACATGTCACTGGGGTGTTACTTTTACTGAGAAGACCTCAAGGATGTGGTACCTTTAAAATTTATTCAAGATGGACCACTATTGGAGCTTTGAGGATACATTTCCATTGCTTGTACCTTGATGAACAAATATGTATCTCTACAGCACCTTTTTTATGTCAGTGTGTCTGATTTTTTTGCTGGTTTTCAAACAGGATTCCAAACGACCAAGAGGATGAGTACCTTCCTAAAGAGCAACAGCTGCAAAGTCTGCTTAATGGGGTAATGCTGGTATTTCTGTCATGCCAGGATTCTGTTTCTTGAAAGCACAGTAAGTGTAGGAACACctgtttgtctaaaacagacaCCTTCCCATCAGACAGTAGTATTTTCAACTGTGTGAGGCTGATCTGGACATCTTAATGACACAATGGTTGGGCATCGATGCCAGCGTACCCCAATGGAGAACACTGTATTTACCTTGCTTGATGTGGGCATTCATAATACTTAATcaactgtgaaaatgttttaatcaacaTTCAATAGATAATTACACATAGCTATTTATTAAGCAGAATTTGTTTGGCACTCCAGAGTaccaaaattacattttacccCCAACTTTCCTTTAGATTCCTTTTTATAGGATATACAATGGGCTAAATTGGTGCAGCAAACTAACACAGTACATTGAATATTTTGTGGCTGCTTCAAACATACAGTAATGCCAAGGAGTAAATTTGTATTCTCTTGAATCTATATCTTGTCTCACATGGTAATACACTTTCTCTAAAAAAGACAAGCCATGAAAAGATGAGGCTTTATGAATACTCTTCATCGGTTTTTCTTTTCCCTGTGTCTTGTCCAGGTTGGAGCCATCTGAGCTCTCTGTGTTTTGCTTGGCCACTTCTTGCTCCTGCTGACTTTGGACAACGCGAAAGCTCCCAGAAGCCTTCACTCTCCATGGATAAATACTAACACTTGACTTTTCTCAGTTGcttctgttttcattcattaGCTAGTCCCTTCTGTCTCCATAAATTTTCAGTTTCTTGAGTTACAAGCATGTATGCATTATTAAACAGCAAAAATCAGACTGAGAAGAGATGGATGCCTGCAGGTTTAGAAGGGCATAGCGATATCCAAACGGGACCTTAATGTACAAGTCTCTTTGTTGGAATCATTGAGAAAAAAATACCTGCACTCTTTCTCAGATATAGATGAACTTTCAGCATtgaatttctttatttccaCAAGCCTGGAGTGTTCATAAAGTATTGCTTGCTCTGGCTCAGGCCACATCTATTATAAATCCAACAGCTGGTAATTCCTATTTACAGTAAGACTCATCAAGTACCGCAAAAAAATTCATTCCTTACTCTCAGCTAAACGTGTGCTTATATAACTTCTCCTCAAACGGAGAagtgtgaatgtttttataaatgtggatttaaaaaaaagtcaaagatAATTCCATGGCCTATGATACCTTCAGTCTTGAGGAGAACAATTTCACTTGCCTATAAACTATCCACAGCTAAAACTGAATTTGATATTGACATCCAACTAACAGAAGAGTGGCTTAAAATTCCTCTTTCCTTTATAAGGAAGCTTTACTAATTTCCTATAGACTGGATAAAGTCATGTGTCACTCCTTATGCATCACTGCAGGAGGGTTTttaattgtgtatgtgtttgtgttactttatatttttattttatgtttccaAAATATGCAATCAACTGTACATTGGGGAAACCAAGAGAAGGCTGGTGGATTGTGTTGTTAAGCACCTAGGTACCATCAGAAGCAGTCATTTCTCAGTAAATCTTCTGGAAGGATATCTTCTTTGCAATAAATGGCCATATTTACTCTAAACATGCTTGATGCTTGTGTGTGAGACTTTTCAACTGCATGTACATCTCTGCTCAGGATAAGTAGAAGTGTGTTTTGGGgtgttcatttttcactttctcaccttgtttatttgtttgtttgttgtggcCCCTTGTGCCAACTTCATCTATTTTTGTAGCTATtcaagaagctttttttttttttgtgaaattcaaacaaaaggtgtgtTTAGTTAATGGATCTCAGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247174 True 2380 lncRNA 0.37 1 10063977 10066356

Neighbor

gene id symbol gene type direction distance location
col1a1a col1a1,LOC108279263,LOC107585052,LOC107740634 coding downstream 2056 10042181 ~ 10061921 (-)
ppp1r9ba ppp1r9b,LOC108412948 coding downstream 30892 9988116 ~ 10033085 (-)
nr1d1 nr1d1 coding downstream 159583 9896866 ~ 9904394 (-)
hoxb13a hoxb13,hoxb13a,hoxb13aa,LOC107687788,LOC107662424,LOC107585093,LOC107740673,LOC107582955 coding downstream 294059 9767867 ~ 9769918 (-)
hoxb9a hoxb9,hoxb9a,LOC107662432,LOC107717219,LOC107585091 coding downstream 322644 9737003 ~ 9741333 (-)
nags nags coding upstream 56030 10122386 ~ 10134023 (-)
mosmoa c17h16orf52,c16orf52.L,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding upstream 80492 10146848 ~ 10185101 (-)
si:ch211-256e16.3 si:ch211-256e16.3,LOC108260968,LOC108412900,LOC107717492,LOC107552129,LOC107674048,LOC106601741 coding upstream 131152 10197508 ~ 10207214 (-)
anks4b anks4b coding upstream 142992 10209348 ~ 10213411 (-)
dxo dxo,LOC106601672,LOC106606733,LOC107666098,LOC107743041,LOC107691245,LOC107752708 coding upstream 157039 10223395 ~ 10229399 (-)
LOC117599011 NA non-coding downstream 136035 9829627 ~ 9927942 (-)
G208613 msl1 non-coding downstream 146448 9914907 ~ 9917529 (-)
LOC113528446 NA non-coding downstream 225565 9837250 ~ 9838412 (-)
G208473 NA non-coding downstream 315938 9746496 ~ 9748039 (-)
G208391 NA non-coding downstream 558227 9494623 ~ 9505750 (-)
G208758 NA non-coding upstream 120680 10187036 ~ 10187252 (-)
G208771 NA non-coding upstream 155354 10221710 ~ 10290885 (-)
G208951 NA non-coding upstream 275555 10341911 ~ 10342222 (-)
G208964 lmtk2 non-coding upstream 381380 10447736 ~ 10450540 (-)
G208980 NA non-coding upstream 451986 10518342 ~ 10518947 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 331411 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 589499 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 644393 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 860337 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 921106 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 384368 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1575801 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1633493 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2231420 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 2267498 12333854 ~ 12339269 (-)

Expression


Co-expression Network