G208700


Basic Information

Item Value
gene id G208700
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10221283 ~ 10221539 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU247237
ATGCATTAatagccggggggtgaaaacttttgaacagaatggagatgtgtacatttttcttattttgcctaaatatcatattttttcatttagtactgcccttcagaggctacagaagatagttatatgtttcccagaagacaaaataagttaaatttaccctgatcttcaaattcaaaaagtttttagttgcataggagtccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247237 True 205 lncRNA 0.33 2 10221283 10221539

Neighbor

gene id symbol gene type direction distance location
LOC113528352 snu13,snu13b,LOC103040872,LOC101154660,LOC105910236 coding upstream 26077 10192804 ~ 10195206 (+)
casc3 casc3 coding upstream 295080 9917962 ~ 9926203 (+)
msl1a msl1 coding upstream 304182 9912768 ~ 9917101 (+)
si:dkey-225f5.4 LOC108258433 coding upstream 327787 9886784 ~ 9893496 (+)
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107667758,LOC107582884,LOC106607494 coding upstream 341398 9840890 ~ 9879885 (+)
helz helz,LOC107691233,LOC107665819 coding downstream 77348 10298887 ~ 10341715 (+)
lmtk2 lmtk2 coding downstream 204520 10426059 ~ 10448685 (+)
bri3 bri3 coding downstream 253815 10475354 ~ 10484206 (+)
fam20ca LOC108274115,LOC108412745,LOC107713951,LOC107584184 coding downstream 526607 10748146 ~ 10798178 (+)
LOC113528286 rai1 coding downstream 587915 10809454 ~ 10846584 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding upstream 159318 10039409 ~ 10061965 (+)
G208504 NA non-coding upstream 338156 9864977 ~ 9883127 (+)
G208507 NA non-coding upstream 362401 9846084 ~ 9858882 (+)
G208472 NA non-coding upstream 473273 9746285 ~ 9748010 (+)
G208415 hoxb9,hoxb9a,LOC107662432,LOC107585091 non-coding upstream 482417 9737009 ~ 9738866 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding downstream 4044 10225583 ~ 10226503 (+)
G208783 NA non-coding downstream 120369 10341908 ~ 10342224 (+)
G208911 NA non-coding downstream 605486 10827025 ~ 10828913 (+)
G208916 NA non-coding downstream 633616 10855155 ~ 10857015 (+)
G209067 NA non-coding downstream 710520 10932059 ~ 10932428 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 233510 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 1157870 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 1263183 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 2212872 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 2367774 7853191 ~ 7853509 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 127863 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 1058541 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1345580 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 1827868 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 1913730 12135269 ~ 12140371 (+)

Expression


Co-expression Network