G208771


Basic Information

Item Value
gene id G208771
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10221710 ~ 10290885 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU247314
tgttgttttctcCCTAAAGTTTAGGCTTTTTCCCAGCATGGTAAAAGGAACTGGCATTGAACAGGCTGATGGGTATAATGATAATTACTTCTgctgtatttaaaacattattatagaATTCACCAAGTGTAATTTCCACCAAAGACCCTGACCAGATAGTCCACCAAATGGACAAATACTCTAAATGAATTGTCATGATTATCCCACTAAGCTTTACTGAGCCACAGTGTACATGTATCATGTAGGAGTCTTCcattcttgcaaaaaaaaacaaacaaaaaaaaaaccactaataGTTTTACATGTTCAAGCACGTAAACACCTACAATTCATTAATCAGTGCGGTTAATAACAACTGTTCATCTCACAGGACAGAGATGTAACCTCTCACATTTGAGTGCGAACTGAATGCTCACGGACACGTGACTCACTAAACTGACTCACTAACTACAGTAATGCACAGTCATGATGTTTTCCACATACAGCTAGCAAAACAGGCCATCGTGTGTTTGAAAGAAAGAATTGCTGTAAAGAAGAAATTCATAGCTgactgattaaaaaattaaataaagtaagaCATTTCTTTGCAATTATAGCAAGATAAATTAAAGTTTCTGTACATTGTACTGTACATCATACAGTGTTTCCTGTACAGAATTAAgaattctaattaaaaaaaaaactctctccaAATAGGCTTTTTACATCATTTCTAAAATCTGACAGTGAATGTGACCAGAACATTTTTTAGAGACAAAGTATCAAAATTAAAAGGCATTTGAGTTGATCTTTGTAATTATTGAGCCCCTACACTAAAAGGGATGATGGTTAAGATCTGCCATAGAGTTTAGAGAGGTAGTAAAGGAAGCAGGCTGACACTGGTTAGTTTTAACTGTTGTTAATGCTTCAGCTTCTTATTGCTGCCCATCAGTTTGAAGGTGACTGCAGTGATCTTCTCATAAACCATGAACATGAGAGCTGCTGTCAGCACCGTCTGAAGAAGCTTCGCCTCCAGACCTTTGTACAGGCCGAGAACTCCACTGCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247314 True 1046 lncRNA 0.37 2 10221710 10290885

Neighbor

gene id symbol gene type direction distance location
anks4b anks4b coding downstream 8299 10209348 ~ 10213411 (-)
si:ch211-256e16.3 si:ch211-256e16.3,LOC108260968,LOC108412900,LOC107717492,LOC107552129,LOC107674048,LOC106601741 coding downstream 14496 10197508 ~ 10207214 (-)
mosmoa c17h16orf52,c16orf52.L,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding downstream 36609 10146848 ~ 10185101 (-)
nags nags coding downstream 87687 10122386 ~ 10134023 (-)
col1a1a col1a1,LOC108279263,LOC107585052,LOC107740634 coding downstream 159789 10042181 ~ 10061921 (-)
cacng1b cacng1,cacng1b,LOC108412846,LOC107666105,LOC107724731,LOC107691235 coding upstream 54380 10345265 ~ 10355473 (-)
cacng4b cacng4b,LOC108259704,LOC107691234,LOC107565862,LOC108412836,LOC107713946,LOC107548710 coding upstream 69301 10360186 ~ 10373055 (-)
aimp2 aimp2,LOC106601790 coding upstream 90308 10381193 ~ 10384307 (-)
trnac-gca_22 NA coding upstream 94164 10385049 ~ 10385120 (-)
pvalb8 prvu,pvalb8,LOC103030409,LOC108412252,LOC107691229,LOC107548708,LOC103141687,LOC103141679,LOC103469263 coding upstream 112895 10403780 ~ 10407080 (-)
G208758 NA non-coding downstream 34458 10187036 ~ 10187252 (-)
G208649 NA non-coding downstream 155354 10063977 ~ 10066356 (-)
LOC117599011 NA non-coding downstream 293768 9829627 ~ 9927942 (-)
G208613 msl1 non-coding downstream 304181 9914907 ~ 9917529 (-)
LOC113528446 NA non-coding downstream 383298 9837250 ~ 9838412 (-)
G208951 NA non-coding upstream 51026 10341911 ~ 10342222 (-)
G208964 lmtk2 non-coding upstream 156851 10447736 ~ 10450540 (-)
G208980 NA non-coding upstream 227457 10518342 ~ 10518947 (-)
G208998 NA non-coding upstream 342650 10633535 ~ 10634150 (-)
G209189 NA non-coding upstream 798128 11089013 ~ 11144984 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 489144 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 747232 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 802126 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1018070 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 1078839 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 159839 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1351272 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1408964 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2006891 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 2042969 12333854 ~ 12339269 (-)

Expression


Co-expression Network