G208980


Basic Information

Item Value
gene id G208980
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10518342 ~ 10518947 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU247571
TAAGATGCTAAGTtatacaacACTTATAtctcagaaataaatgaatgttgtcattatctgtatctgtcatTATAAGAGCCCTTTTAATCATCTTATGGGATTTTGCTCTGCTAATTTATAGTACTTTCTCCCAGTGTATACAGGGGCTGGGCTCCCAGTGTATATAGTAACACAAAGTTATACAACCCATATCAAGTCATTGGTTGAGAGACTCATCCAAAGCAATTTTTCATGATTTGGGAAGCATTTAATGTAGATATGCATGCTAGGCGACTAAATACGGCGAGTATCAATGGTCAGTTTTCACCAACACAAGAGCTGACCTCTGCCTGCAGAATCACAGAGGTGTCTGTTCGGATGAGAATGAAAAGATTCAGACCACTGCAGAGTTCATCAGAAAGCAGCAGAATCAAAGCAGTACATTTAGTCTGTAATTTCTCTCTGGGAGGAAGGAGACAAACACTAATGCAGACGATCCGaacggaaataaaatcacagagtaaATCCCATCTGAATATGATCTATGACAGTTATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247571 True 536 lncRNA 0.38 2 10518342 10518947

Neighbor

gene id symbol gene type direction distance location
pvalb5 LOC108278987,LOC108412247 coding downstream 91114 10420040 ~ 10427228 (-)
LOC113527991 LOC108279005,LOC103031037,LOC108412819,LOC108273406,LOC107665844 coding downstream 100427 10415901 ~ 10417915 (-)
pvalb4 LOC100305042,LOC107724737,LOC108412813,LOC107665849,LOC107548706,LOC103030720 coding downstream 103574 10413005 ~ 10414768 (-)
pvalb8 prvu,pvalb8,LOC103030409,LOC108412252,LOC107691229,LOC107548708,LOC103141687,LOC103141679,LOC103469263 coding downstream 111262 10403780 ~ 10407080 (-)
trnac-gca_22 NA coding downstream 133222 10385049 ~ 10385120 (-)
nptx2a nptx2,LOC108275595,LOC107665931,LOC107724745,LOC107713953 coding upstream 27374 10546321 ~ 10557800 (-)
srebf1 srebf1,LOC107691218 coding upstream 328754 10847701 ~ 10869084 (-)
LOC113527942 tom1l2 coding upstream 353087 10872034 ~ 10898540 (-)
tbl3 tbl3 coding upstream 424291 10943238 ~ 10962840 (-)
rcvrna LOC108260894,LOC108412638,LOC107583783,LOC107725264,LOC107690016,LOC107555668,LOC107755173 coding upstream 490340 11009287 ~ 11011550 (-)
G208964 lmtk2 non-coding downstream 67802 10447736 ~ 10450540 (-)
G208951 NA non-coding downstream 176120 10341911 ~ 10342222 (-)
G208771 NA non-coding downstream 227457 10221710 ~ 10290885 (-)
G208758 NA non-coding downstream 331090 10187036 ~ 10187252 (-)
G208649 NA non-coding downstream 451986 10063977 ~ 10066356 (-)
G208998 NA non-coding upstream 114588 10633535 ~ 10634150 (-)
G209189 NA non-coding upstream 570066 11089013 ~ 11144984 (-)
LOC113528410 NA non-coding upstream 699712 11218659 ~ 11221378 (-)
G209529 NA non-coding upstream 870013 11388960 ~ 11389231 (-)
G209538 NA non-coding upstream 881775 11400722 ~ 11401423 (-)
tecpr1b LOC108276900 other downstream 47824 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 785776 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 1043864 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 1098758 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1314702 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 1123210 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1180902 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1778829 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1814907 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 2027386 12546333 ~ 12559213 (-)

Expression


Co-expression Network