G208998


Basic Information

Item Value
gene id G208998
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10633535 ~ 10634150 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU247589
tcaagagccaccttcatgaatgtaaatacagacagtttgcctcaagatgcaaaccgctggtaacactcaagaacacaaaggccagattagactttgctaaaaaacctctaaaaaaagcctgaccagttctgatgcaagattaacttgtaccagaatgataccacatcatctgtcaaacatgtggaggcagtgttatggcatgggcatgtttggctgccaatggaactgggtcactggggtttattgataatgtgactgttgatagaagtagcaggatgaattctgaagtgtacagagctatactttctgctcagattcagtcaaatgctgcaaaactgataggacagcacttcacagtacagatggataacaacccaaaacatactgtgaaagcagcccaagagcttggaaattaaatgttcttaaatggctgagtcagtcacctgacctcaacccaactgagctgcttttcacttactgaagacaaatctgaaggcagaatgacccacaaacaagcagcaactgaagatggctgcagtaaagacctggcaaatcatctcaagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247589 True 565 lncRNA 0.42 2 10633535 10634150

Neighbor

gene id symbol gene type direction distance location
nptx2a nptx2,LOC108275595,LOC107665931,LOC107724745,LOC107713953 coding downstream 75735 10546321 ~ 10557800 (-)
baiap2l1b LOC108276911,LOC108412765 coding downstream 106249 10485735 ~ 10527286 (-)
pvalb5 LOC108278987,LOC108412247 coding downstream 206307 10420040 ~ 10427228 (-)
LOC113527991 LOC108279005,LOC103031037,LOC108412819,LOC108273406,LOC107665844 coding downstream 215620 10415901 ~ 10417915 (-)
pvalb4 LOC100305042,LOC107724737,LOC108412813,LOC107665849,LOC107548706,LOC103030720 coding downstream 218767 10413005 ~ 10414768 (-)
srebf1 srebf1,LOC107691218 coding upstream 213551 10847701 ~ 10869084 (-)
LOC113527942 tom1l2 coding upstream 237884 10872034 ~ 10898540 (-)
tbl3 tbl3 coding upstream 309088 10943238 ~ 10962840 (-)
rcvrna LOC108260894,LOC108412638,LOC107583783,LOC107725264,LOC107690016,LOC107555668,LOC107755173 coding upstream 375137 11009287 ~ 11011550 (-)
LOC113528015 NA coding upstream 389522 11023672 ~ 11025804 (-)
G208980 NA non-coding downstream 114588 10518342 ~ 10518947 (-)
G208964 lmtk2 non-coding downstream 182995 10447736 ~ 10450540 (-)
G208951 NA non-coding downstream 291313 10341911 ~ 10342222 (-)
G208771 NA non-coding downstream 342650 10221710 ~ 10290885 (-)
G208758 NA non-coding downstream 446283 10187036 ~ 10187252 (-)
G209189 NA non-coding upstream 454863 11089013 ~ 11144984 (-)
LOC113528410 NA non-coding upstream 584509 11218659 ~ 11221378 (-)
G209529 NA non-coding upstream 754810 11388960 ~ 11389231 (-)
G209538 NA non-coding upstream 766572 11400722 ~ 11401423 (-)
G209541 LOC108256081 non-coding upstream 768928 11403078 ~ 11476796 (-)
tecpr1b LOC108276900 other downstream 163017 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 900969 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 1159057 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 1213951 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1429895 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 1008007 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1065699 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1663626 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1699704 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1912183 12546333 ~ 12559213 (-)

Expression


Co-expression Network