G209069 (tbl3,LOC107724722,LOC106601810)


Basic Information

Item Value
gene id G209069
gene name tbl3,LOC107724722,LOC106601810
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10943255 ~ 10947541 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU247667
atttatttaaaatcttcaATGACTATGACAATAAAGAGCACAAGATTCTTCTTTCTGGAACATGATATAAAAAGGCAAAGCATGTCCTTTAGAATAGTACATACAATTAAATGACGTACAGCTTAATTCTAGCTGTTGACAGAGAGACCTGGTTCCTGCTTGCTCTCGTTCAACACAGCCACACCATTCAGGACTGTATACAGAGACTGTGACACTTTGATCCCTTACTGATCAGCGTGATCAGCTTGCGTTGGTCAGAATACAGGAAGTGGCCCCTGCAGCCTTGGCAGGAGCAACTGTGGAAATGTCcacatcatcctcatcatctgAGCTCTCATCACTGGATACATGACCCCTGTTTTTGACCCCGTTCACACCCCTTTCTTTGGTGCTGACACCTTTCAAGGCACTGACACTGTCATTGTCGCTGTTCTCTGAGTTTTCTTCGCTGCTGTCCGCTTCCTCCACGTCATCGCTATTGTCGGCGTTCTCCCGCTGTCTACTCGGTTTCTGCTGCCCTGGCTGCCTGTCTAGTATGAATATGTCCTGAGGACTGGTGTCCATCTCTTCTCCCTGTAGTTCCCCACTGTCTTTGCTTCCCGTCACTCGCATCTTCTGCCACATGTAATCCAGGAACATGGAGGCCTGGAGCATACGGCCAATCCTCTGCATGTGTCTCTCAGTATAAGGGATGAGGCCCTCTAGATGAGTGCGCGCTCCCTGGAACTGCAGCAGCTCGTCTGGGCTCAGGTGAGTCAGCAGCACCTGTAACACTGCCTGGGCACTCAGACAGCTCCGTGCGTTCGTGTTCCACACCACACAGTATCGCAGCAGAGACTCTGAACATACAAGCACATGACCAAGTCACTAGATGATTTCCTATAAACCTGAACATAATAACTGTCAGGTTCATATTAGCCCAA

Function

symbol description
tbl3 Predicted to enable U3 snoRNA binding activity. Acts upstream of or within lymphocyte differentiation; regulation of cell cycle process; and thymus development. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in several structures, including brain; eye; fin bud; gut; and hematopoietic stem cell. Orthologous to human TBL3 (transducin beta like 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247667 True 923 lncRNA 0.48 3 10943255 10947541

Neighbor

gene id symbol gene type direction distance location
noxo1a LOC108261250 coding upstream 2256 10937303 ~ 10940999 (+)
gid4 gid4,LOC107724729,LOC107555661,LOC106601817,LOC107559524 coding upstream 23277 10911457 ~ 10919978 (+)
drc3 drc3 coding upstream 33448 10899639 ~ 10909807 (+)
LOC113528286 rai1 coding upstream 96671 10809454 ~ 10846584 (+)
fam20ca LOC108274115,LOC108412745,LOC107713951,LOC107584184 coding upstream 145077 10748146 ~ 10798178 (+)
LOC113527977 LOC108258077,LOC106964020,LOC103155899,LOC107091756,LOC101062683,LOC105938884 coding downstream 15434 10962975 ~ 10966262 (+)
gas7a gas7,gas7a,LOC108260882,LOC108412615,LOC107583758 coding downstream 37316 10984857 ~ 11006021 (+)
aatka LOC108277323 coding downstream 83492 11031033 ~ 11072825 (+)
sdk2a sdk2,LOC108261013,LOC107672436,LOC107744971 coding downstream 289972 11237513 ~ 11372332 (+)
pmp22a LOC108256081 coding downstream 455774 11403315 ~ 11405546 (+)
G209067 NA non-coding upstream 10827 10932059 ~ 10932428 (+)
G208916 NA non-coding upstream 86240 10855155 ~ 10857015 (+)
G208911 NA non-coding upstream 114342 10827025 ~ 10828913 (+)
G208783 NA non-coding upstream 601031 10341908 ~ 10342224 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding upstream 716752 10225583 ~ 10226503 (+)
LOC117598771 NA non-coding downstream 24180 10971721 ~ 10982293 (+)
G209390 NA non-coding downstream 670494 11618035 ~ 11618234 (+)
G209392 NA non-coding downstream 686371 11633912 ~ 11634481 (+)
G209410 NA non-coding downstream 761187 11708728 ~ 11708936 (+)
LOC113528367 NA non-coding downstream 860720 11808261 ~ 11822910 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 161796 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 955482 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 1879842 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 1985155 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 2934844 8008186 ~ 8008411 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 332539 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 619578 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 1101866 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 1187728 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 1211162 12158703 ~ 12190070 (+)

Expression


Co-expression Network