G209392


Basic Information

Item Value
gene id G209392
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11633912 ~ 11634481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248037
AGATATGATGGTTACAGGGAGTTAATTGATAATGTGGGATTTCTAAAACTCCTGTGAAACTTGAGGCAGAAGACAGGAATCCCTGAATCTTCTATGATTTTTGACAAAAACCAGGTTATATGgttagtagtgtagtgtattttGAGCataaattctttattaaataacagacagacagagaaagtaTAGCATATGGGAACATCTGGCCTTTGATTTAAATAGTTTGACTAAGAAATCCAAATTTAGCATAAATGAACTAACTCCATAGTCTGTATTGCAAACATGAAAAAGAGTCTGTCATGAAGGAGGACACAGATGTAGCAGATTGGGAGATGGCCTGCTTTAAAGCACAGTCAGTAAATACCAGATTCAGATTACTACACTACAGATGGTTAATGAGAACTTACTTTACTCCAGTGAGACTGAAATGGATTTCCCCTGATATCCCAGATATTTGTGTTAAGTCTATGGAAACGCCTTAATCCATTGTCTATGGGAATGTCCAGAGATACAGTACTTTTGGAAGGAGGTTGTTACATGCATAACTTATGTAATCAGAAATTAAATCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248037 True 570 lncRNA 0.36 1 11633912 11634481

Neighbor

gene id symbol gene type direction distance location
gcat gcat,LOC107703894 coding upstream 239 11626282 ~ 11633673 (+)
si:ch73-281f12.4 LOC108278921 coding upstream 32500 11578560 ~ 11601412 (+)
unm_sa1261 unm_sa1261,LOC108274299,LOC108432226,LOC107726818,LOC107573384,LOC107674909,LOC107717497 coding upstream 73083 11538334 ~ 11560829 (+)
LOC113528662 NA coding upstream 96747 11537047 ~ 11537165 (+)
atp5pd atp5h,LOC103042933,LOC103361245 coding upstream 98220 11531521 ~ 11535692 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding downstream 844 11635325 ~ 11642057 (+)
foxred2 foxred2 coding downstream 13668 11648149 ~ 11657127 (+)
ankrd54 ankrd54,LOC107728844,LOC107563363 coding downstream 23048 11657529 ~ 11662120 (+)
hmgxb4a hmgxb4 coding downstream 27740 11662221 ~ 11671601 (+)
si:dkeyp-69e1.8 LOC108278349 coding downstream 37225 11671706 ~ 11677461 (+)
G209390 NA non-coding upstream 15678 11618035 ~ 11618234 (+)
LOC117598771 NA non-coding upstream 651619 10971721 ~ 10982293 (+)
G209069 tbl3,LOC107724722,LOC106601810 non-coding upstream 686371 10943255 ~ 10947541 (+)
G209067 NA non-coding upstream 701484 10932059 ~ 10932428 (+)
G208916 NA non-coding upstream 776897 10855155 ~ 10857015 (+)
G209410 NA non-coding downstream 74247 11708728 ~ 11708936 (+)
LOC113528367 NA non-coding downstream 173780 11808261 ~ 11822910 (+)
G209775 NA non-coding downstream 385382 12019863 ~ 12021132 (+)
G209798 NA non-coding downstream 427088 12061569 ~ 12061782 (+)
G209863 NA non-coding downstream 498779 12133260 ~ 12133471 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 56089 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 245892 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 852453 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 1646139 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2570499 9061563 ~ 9063413 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 414926 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 500788 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 524222 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 733085 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1800900 13435381 ~ 13445686 (+)

Expression


Co-expression Network