LOC113528410


Basic Information

Item Value
gene id LOC113528410
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11218659 ~ 11221378 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248077
GCACCAACCCAGGGCCAAGGCTGAGTATTTTGGTTGTTTCGTGATTTAAAGAGAATCAGTGCCCTAAAGAGTAACTCTATCAGCACGGAAAAGCTATGAAGGATTTTTTCTGGTTCATTTGGAGCACATTTGAAGGGTGAAAAAGAAGACAGAGGAAGCTTGAGAGACTCGAGCCTGGACACTAGCCATGGAGGAGGATTATATGAAGAACAGTCACCCTGATGTCATAAGGCAGCAGCACATGAGCAACGTGGATAAGGGCTACTCTGAGAGCAAGCGTGCCGATTCGGGGCCAAATGGTTGCATGCGGTGCTGCATGAGTACCAAGAAATGCCTGATGAGCCCAGAATGTGGCAGAGCACTCAGCATCGCTAATGTCATCGCCATGTGTGGCATGTGTATCCGGATGTGGACGTagATGTCTACTGCTTCTGAATCAAGAAAAGCTTGTCTCCTGGTGGCTGCCGCCCTGAACTTAGAACAATAGGAGGCATCATGATTATGGAATCTCTACTAAACCTTTACTAAACAACCATTATAACACACCCTTAGGTTGaactccattttattttatcacctctatcaataataatatatctTTGAAAACACGGCCAACATTGCAGCATATCTGTAagtaaacaattttaaatagGAGAAAGggtaatgaaaatgtaatgtaaaaaatgattCTCCGAATGGATGAAtaacattaatttttaatgtataaaacatGTCAAGGATGTTACATGGATGCCATCCTCAGGTCTCTGTCTTCCCTCAGCTGCTCTGTCTTAGCATTTGTAGAAGTGACTGAGTGCCTGCAGGTGAACAATCAGAAAAACCCAGACCTTGATTTTAACAATCCACCACTTTATGCCTCAACAAAAACCCTGGGTATTAGATACTTTTAGCTCAGAACAGTGCTGTGAAGGGTGATTTTTCAACTACTTTCTGCTACAGATTATTCAGTGCCGCTCTACGATTGTCATCTGCAGCTAAAGTAATTAAACTGAAAAGACTGGTAGTACTGGAGGTCATgttcatttagtcatttagtgtttaattttcattttgttgaCAATTTTTCATGGTTAATTACCGTAAATCAGTTAAGTAAGTTAATCATTTGAAGTGTCTTCCCCCACAATTGTAATgctttttatttgcatatgagTAATGAAGAATAGTTGCCTTTTTGGAATTCTCAACACATAACCTCATGTATTCTATTATTCTCATAACTGATTATGAACTAACTAAAACACTTGTCGTTTTTCTAAATTTcacaaatttcacaaaaaagtGACATTTCTGACTTTGATTTACTGCTCTCTGCTCttcaaaatacaaagaaaaca
>XR_003402938.2
CACCCTAAGAACGCACCAACCCAGGGCCAAGGCTGAGTATTTTGGTTGTTTCGTGATTTAAAGAGAATCAGTGCCCTAAAGAGTAACTCTATCAGCACGGAAAAGCTATGAAGGATTTTTTCTGGTTCATTTGGAGCACATTTGAAGGGTGAAAAAGAAGACAGAGGAAGCTTGAGAGACTCGAGCCTGGACACTAGCCATGGAGGAGGATTATATGAAGAACAGTCACCCTGATGTCATAAGGCAGCAGCACATGAGCAACGTGGATAAGGGCTACTCTGAGAGCAAGCGTGCCGATTCGGGGCCAAATGGTTGCATGCGGTGCTGCATGAGTACCAAGAAATGCCTGATGAGCCCAGAATGTGGCAGAGCACTCAGCATCGCTAATGTCATCGCCATGTGTGGCATGTGTATCCGGATGTGGACGTagATGTCTACTGCTTCTGAATCAAGAAAAGCTTGTCTCCTGGTGGCTGCCGCCCTGAACTTAGAACAATAGGAGGCATCATGATTATGGAATCTCTACTAAACCTTTACTAAACAACCATTATAACACACCCTTAGGTTGaactccattttattttatcacctctatcaataataatatatctTTGAAAACACGGCCAACATTGCAGCATATCTGTAagtaaacaattttaaatagGAGAAAGggtaatgaaaatgtaatgtaaaaaatgattCTCCGAATGGATGAAtaacattaatttttaatgtataaaacatGTCAAGGATGTTACATGGATGCCATCCTCAGGTCTCTGTCTTCCCTCAGCTGCTCTGTCTTAGCATTTGTAGAAGTGACTGAGTGCCTGCAGGTGAACAATCAGAAAAACCCAGACCTTGATTTTAACAATCCACCACTTTATGCCTCAACAAAAACCCTGGGTATTAGATACTTTTAGCTCAGAACAGTGCTGTGAAGGGTGATTTTTCAACTACTTTCTGCTACAGATTATTCAGTGCCGCTCTACGATTGTCATCTGCAGCTAAAGTAATTAAACTGAAAAGACTGGTAGTACTGGAGGTCATgttcatttagtcatttagtgtttaattttcattttgttgaCAATTTTTCATGGTTAATTACCGTAAATCAGTTAAGTAAGTTAATCATTTGAAGTGTCTTCCCCCACAATTGTAATgctttttatttgcatatgagTAATGAAGAATAGTTGCCTTTTTGGAATTCTCAACACATAACCTCATGTATTCTATTATTCTCATAACTGATTATGAACTAACTAAAACACTTGTCGTTTTTCTAAATTTcacaaatttcacaaaaaagtGACATTTCTGACTTTGATTTACTGCTCTCTGCTCttcaaaatacaaagaaaacatgatACATA

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0042254 ribosome biogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248077 False 1358 lncRNA 0.39 3 11218668 11221366
XR_003402938.2 True 1379 lncRNA 0.39 3 11218659 11221378

Neighbor

gene id symbol gene type direction distance location
ttyh2l LOC108277373,LOC108432236 coding downstream 27144 11154915 ~ 11191515 (-)
LOC113528317 chmp6,LOC108277388,LOC108432238,LOC106606311,LOC105939499 coding downstream 66496 11147394 ~ 11152163 (-)
baiap2a LOC108277336,LOC108432239,LOC107711237,LOC107672452,LOC107670476 coding downstream 72827 11074517 ~ 11145832 (-)
LOC113528015 NA coding downstream 192855 11023672 ~ 11025804 (-)
rcvrna LOC108260894,LOC108412638,LOC107583783,LOC107725264,LOC107690016,LOC107555668,LOC107755173 coding downstream 207109 11009287 ~ 11011550 (-)
hs3st3b1a si:ch211-216b21.2,hs3st3a1,LOC108260710,LOC107704231,LOC107684140,LOC107753271 coding upstream 204907 11426285 ~ 11438335 (-)
LOC113528663 NA coding upstream 211132 11432510 ~ 11432628 (-)
LOC113528102 rnf222 coding upstream 271897 11493275 ~ 11495487 (-)
LOC113528402 LOC108258929 coding upstream 288353 11509731 ~ 11518087 (-)
slc16a5b LOC108274816 coding upstream 299388 11520766 ~ 11529442 (-)
G209189 NA non-coding downstream 73675 11089013 ~ 11144984 (-)
G208998 NA non-coding downstream 584509 10633535 ~ 10634150 (-)
G208980 NA non-coding downstream 699712 10518342 ~ 10518947 (-)
G208964 lmtk2 non-coding downstream 768119 10447736 ~ 10450540 (-)
G208951 NA non-coding downstream 876437 10341911 ~ 10342222 (-)
G209529 NA non-coding upstream 167582 11388960 ~ 11389231 (-)
G209538 NA non-coding upstream 179344 11400722 ~ 11401423 (-)
G209541 LOC108256081 non-coding upstream 181700 11403078 ~ 11476796 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding upstream 310198 11531576 ~ 11535697 (-)
G209618 NA non-coding upstream 379094 11600472 ~ 11601244 (-)
tecpr1b LOC108276900 other downstream 748141 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1486093 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 1744181 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 1799075 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 2015019 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 420779 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 478471 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1076398 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1112476 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1324955 12546333 ~ 12559213 (-)

Expression


Co-expression Network