G209553 (atp5h,LOC103042933,LOC101487002,LOC107599347)


Basic Information

Item Value
gene id G209553
gene name atp5h,LOC103042933,LOC101487002,LOC107599347
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11531576 ~ 11535697 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248206
gcaCATCAAAActtaaacaatttatttcatGCTTAGCCAGACACAGAACAGCACTGAACCACCCAACAAAGTCTTTTCTTTAGAATTTTTACAGACTGAACCAAACAATTTAATTCAGAATTTGATGTTTTATTAACTTATAAACAATTGATCTTTCCTAAATTACAGTTCAGAAATAGGCTTGTGTGGCCAATATGGATATTTCTCCTTGTCCAGCTTGGTCTCAGGGAAAGCTTCATTGAGGTCTTCAATGGTCATCTGGTCAAAGGGAATCATGTTCCTGAACTTCTCAAGCTGTTTTCATACTGAGAAATGCGAGCCTTGGATGCCTCAATGTAGGCTGCAGCACTTTTGTTAGCCTCCTGCTCCTGTGTGTTGATCTTAGCTGACTGGGTGTCCACTGGCTCAGGAACTGTCAAAGCAGCAAACTTCTTCTCAAACTCGTCCACCATGCCTGCTTTAGCTACCACCTTCCTGTAATAGCTCCAGTCAATGGGGGTCGGCTTCTCCGGCAGTGAGGCAAGTTTAGCAGCAATGGCATCGCTGCGGGTCTTCAGGTTGTTGAACATCGTTCTCTGGTTAGGAGGAACCCTCTCAGCGAAGGCCAGCCAGTCAATGGCCTTTATGGCAGCACGTCGTCCAGCCATCTCTCAATGCTTGTCAAGGATCAAGCCGCTGCAAAGACAGGAACGTGATGGCCGCCGCAACCGGA

Function

symbol description
atp5h Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ion transport. Located in mitochondrion. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Orthologous to human ATP5PD (ATP synthase peripheral stalk subunit d).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248206 True 712 lncRNA 0.46 6 11531576 11535697

Neighbor

gene id symbol gene type direction distance location
slc16a5b LOC108274816 coding downstream 2134 11520766 ~ 11529442 (-)
LOC113528402 LOC108258929 coding downstream 13489 11509731 ~ 11518087 (-)
LOC113528102 rnf222 coding downstream 36089 11493275 ~ 11495487 (-)
hs3st3b1a si:ch211-216b21.2,hs3st3a1,LOC108260710,LOC107704231,LOC107684140,LOC107753271 coding downstream 93241 11426285 ~ 11438335 (-)
LOC113528663 NA coding downstream 98948 11432510 ~ 11432628 (-)
LOC113528647 NA coding upstream 863 11536560 ~ 11536678 (-)
LOC113528658 NA coding upstream 30313 11566010 ~ 11566128 (-)
spc24 spc24 coding upstream 209794 11745491 ~ 11751424 (-)
kri1 kri1 coding upstream 217346 11753043 ~ 11763823 (-)
LOC113528652 NA coding upstream 220128 11755825 ~ 11755923 (-)
G209541 LOC108256081 non-coding downstream 54780 11403078 ~ 11476796 (-)
G209538 NA non-coding downstream 130153 11400722 ~ 11401423 (-)
G209529 NA non-coding downstream 142345 11388960 ~ 11389231 (-)
LOC113528410 NA non-coding downstream 310198 11218659 ~ 11221378 (-)
G209189 NA non-coding downstream 386592 11089013 ~ 11144984 (-)
G209618 NA non-coding upstream 64775 11600472 ~ 11601244 (-)
G209624 NA non-coding upstream 74937 11610634 ~ 11617188 (-)
LOC113527962 NA non-coding upstream 83843 11619540 ~ 11626068 (-)
G209646 hmgxb4 non-coding upstream 128788 11664485 ~ 11665129 (-)
LOC117598828 NA non-coding upstream 309876 11845573 ~ 11879417 (-)
tecpr1b LOC108276900 other downstream 1061058 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1799010 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2057098 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 2111992 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 2327936 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 106460 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 164152 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 762079 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 798157 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1010636 12546333 ~ 12559213 (-)

Expression


Co-expression Network