G209618


Basic Information

Item Value
gene id G209618
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11600472 ~ 11601244 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248288
TTAATGCCTGCTGCGAAACAGACAAGACTAGTAGCTGGAAATTTGATCCATGGCTTTGAGCATATTCAACAGAAATACTTTGCTCTGACCAGAACAAATTAAAAGCAGTACTTGATACAAGCCAGACTTTGGTTAACATATAttgaacaaaaatataaaataatttttcattgaTATTACTGTAATATTGCGTATATGTGTCTGCATATGTAGGATAAGTGTTTTGCTCACTGATGCTAAAACAGGCAAACAAACAACAGGATAAAGTCTGAGCCACAGCCATTTCCAGACAAACCTGAATTGTGTTCCATTTAATGCCGATGACAAAGAGATGAATACTGAATTAAATTACTGCATTAAACATTGGTTTTAAGTCATTTGGTATGCATTTTTTGCATCCAAGCAGACATGATTAAAACGTCACCCACagggagttcaaatcccaaacTTAGAAGAAAACATGTCTCACTAAAGTCTTCAGTAaatttttggtattttatttGGTATTCaaaaacaaaagtctgAGGACCTCAGCCAGCAGCTCGGAAGAGTAAAAGGTCTGATTTTGGTGGTGGAAGAACAAAAAGTCCAATAGTTTGTCCTGAAAACCCTTAGTGGAAACAGGAGAGTCCCCCACTGTTTTAGCATCTGGTGCTGGAGCTCCTGCCACTGCTTCTGGCTTCAGTTTTGGCCACTAGCAACCGGAGAGAATCTCCTGATGTCCGGATGATCTCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248288 True 737 lncRNA 0.39 2 11600472 11601244

Neighbor

gene id symbol gene type direction distance location
LOC113528658 NA coding downstream 34344 11566010 ~ 11566128 (-)
LOC113528647 NA coding downstream 63794 11536560 ~ 11536678 (-)
slc16a5b LOC108274816 coding downstream 71030 11520766 ~ 11529442 (-)
LOC113528402 LOC108258929 coding downstream 82385 11509731 ~ 11518087 (-)
LOC113528102 rnf222 coding downstream 104985 11493275 ~ 11495487 (-)
spc24 spc24 coding upstream 144247 11745491 ~ 11751424 (-)
kri1 kri1 coding upstream 151799 11753043 ~ 11763823 (-)
LOC113528652 NA coding upstream 154581 11755825 ~ 11755923 (-)
ldlra ldlr coding upstream 171835 11773079 ~ 11785047 (-)
smarca4a smarca4,smarca4a,LOC108278850,LOC107658703,LOC107758124 coding upstream 189331 11790575 ~ 11809016 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding downstream 64775 11531576 ~ 11535697 (-)
G209541 LOC108256081 non-coding downstream 123676 11403078 ~ 11476796 (-)
G209538 NA non-coding downstream 199049 11400722 ~ 11401423 (-)
G209529 NA non-coding downstream 211241 11388960 ~ 11389231 (-)
LOC113528410 NA non-coding downstream 379094 11218659 ~ 11221378 (-)
G209624 NA non-coding upstream 9390 11610634 ~ 11617188 (-)
LOC113527962 NA non-coding upstream 18296 11619540 ~ 11626068 (-)
G209646 hmgxb4 non-coding upstream 63241 11664485 ~ 11665129 (-)
LOC117598828 NA non-coding upstream 244329 11845573 ~ 11879417 (-)
G209829 NA non-coding upstream 467010 12068254 ~ 12068622 (-)
tecpr1b LOC108276900 other downstream 1129954 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1867906 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2125994 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 2180888 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 2396832 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 40913 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 98605 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 696532 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 732610 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 945089 12546333 ~ 12559213 (-)

Expression


Co-expression Network