G209624


Basic Information

Item Value
gene id G209624
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11610634 ~ 11617188 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248294
CGCCACGTGGTTAACTCTGTTTTAAGCCTTGCTGTGGAACGTTGAATGGATtgaaatacagaaaagaaaaagtcttgcattctttttattttgatatCTAAATTGAAGATGGGTTTATTGGAGTCTTATTCGACTGATCCTGAACATTTCACTCGGTTTTTCGTTTGCCTGATGAATACAGAAGCTTCCCATAGATAAAGAAGTGAAATGAACTGGTTAAAGATGCCACTTGTTTTCAGCGAAATCCTGGTGCTACTGGGAGAGTGTTCAACTGCAGGAGTCCTTTAGACCAGAATGTAAAGCTGTCTGTGGAAGAAACACTTCCTGATCCAAGATATGTTCAGCTTCAGGATGAGGAAGATCAGCAGAGGCTTTCACATCATGAAATTCAAGCGACCCTAAGTGTGCTAAGATTCCCAGATGCCTTACTAACTTGCCTTAGGCGATGTCTCGCTGCCAGCTGGAGAGTGTTCAGGTGCTGCTGCTGGCATTGCTCAGACTGTAATGTGCTGTTATCAGTGGAAGAAACAGGCCCTGGGTTCTGAATGAAGATGATGGAGGATTGATTTTGCaccatattcatttattcagtcaaattttaatataaacctgttttgtatatttgtgataaataaataaatataactactAAAGAAGTGTC

Function

GO:

id name namespace
GO:0031514 motile cilium cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248294 True 661 lncRNA 0.40 5 11610634 11617188

Neighbor

gene id symbol gene type direction distance location
LOC113528658 NA coding downstream 44506 11566010 ~ 11566128 (-)
LOC113528647 NA coding downstream 73956 11536560 ~ 11536678 (-)
slc16a5b LOC108274816 coding downstream 81192 11520766 ~ 11529442 (-)
LOC113528402 LOC108258929 coding downstream 92547 11509731 ~ 11518087 (-)
LOC113528102 rnf222 coding downstream 115147 11493275 ~ 11495487 (-)
spc24 spc24 coding upstream 128303 11745491 ~ 11751424 (-)
kri1 kri1 coding upstream 135855 11753043 ~ 11763823 (-)
LOC113528652 NA coding upstream 138637 11755825 ~ 11755923 (-)
ldlra ldlr coding upstream 155891 11773079 ~ 11785047 (-)
smarca4a smarca4,smarca4a,LOC108278850,LOC107658703,LOC107758124 coding upstream 173387 11790575 ~ 11809016 (-)
G209618 NA non-coding downstream 9390 11600472 ~ 11601244 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding downstream 74937 11531576 ~ 11535697 (-)
G209541 LOC108256081 non-coding downstream 133838 11403078 ~ 11476796 (-)
G209538 NA non-coding downstream 209211 11400722 ~ 11401423 (-)
G209529 NA non-coding downstream 221403 11388960 ~ 11389231 (-)
LOC113527962 NA non-coding upstream 2352 11619540 ~ 11626068 (-)
G209646 hmgxb4 non-coding upstream 47297 11664485 ~ 11665129 (-)
LOC117598828 NA non-coding upstream 228385 11845573 ~ 11879417 (-)
G209829 NA non-coding upstream 451066 12068254 ~ 12068622 (-)
G209830 NA non-coding upstream 451625 12068813 ~ 12069180 (-)
tecpr1b LOC108276900 other downstream 1140116 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1878068 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2136156 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 2191050 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 2406994 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 24969 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 82661 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 680588 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 716666 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 929145 12546333 ~ 12559213 (-)

Expression


Co-expression Network