G209646 (hmgxb4)


Basic Information

Item Value
gene id G209646
gene name hmgxb4
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11664485 ~ 11665129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248316
TTCTACTTCTTTCCCCACCATAGGCAGAGGCTCTCGGCTGTGCTGTTTCTTCTTTGGTGGTTTAGATGTTGTCATTCGGTCCctgtccttctccttcttcatcCCACTTTTTTTGATGCCAGAGGAGGAATGATGTCCCATACTCCCTGAAGATGGGTGTGCAGGGAAAGGGAATCCTTCAATTGACTCTCCTCCCTCGTTCCTCTCCTTGGGCGAAAGGATGAGCTTCATTTTCAGCCCCTCACCATCTCGCAGTGTAAGTGGCTCACCCCTCCCAGCTCCGGCATGGAACAAGGAAGACTTAGAAGAAGACGAGGTGGACGAAGAATGCTTCTTAGACAACGACGACGAACTCGGATGGCgggaatgagagaaagagtgggAGAAAGAGTGGCCACTCTTGGAGCTGCCTTCACGCTTACGATCTTTGGAGGAGGAATGTGAGGAGTGAGGAGGGTAAGAGGGTTTTTTATGAATGTTGGGGACAGGCTCAGAGCCTGTGGCCATTGGGGAGGTGATAGCCTGCAAGAGGCCCATAGCAGTATCTGTAGAGTGGGCCGGCTGAGAGGAGCATGATGACGAGCGCGAGGGTGAGCGTTCAGAGGACTTACGCTTCTTCTTATGAGGAGGGCCTGAGCCATGGTG

Function

symbol description
hmgxb4 Enables identical protein binding activity. Predicted to be involved in negative regulation of Wnt signaling pathway. Part of NURF complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248316 True 645 lncRNA 0.53 1 11664485 11665129

Neighbor

gene id symbol gene type direction distance location
LOC113528658 NA coding downstream 98357 11566010 ~ 11566128 (-)
LOC113528647 NA coding downstream 127807 11536560 ~ 11536678 (-)
slc16a5b LOC108274816 coding downstream 135043 11520766 ~ 11529442 (-)
LOC113528402 LOC108258929 coding downstream 146398 11509731 ~ 11518087 (-)
LOC113528102 rnf222 coding downstream 168998 11493275 ~ 11495487 (-)
spc24 spc24 coding upstream 80362 11745491 ~ 11751424 (-)
kri1 kri1 coding upstream 87914 11753043 ~ 11763823 (-)
LOC113528652 NA coding upstream 90696 11755825 ~ 11755923 (-)
ldlra ldlr coding upstream 107950 11773079 ~ 11785047 (-)
smarca4a smarca4,smarca4a,LOC108278850,LOC107658703,LOC107758124 coding upstream 125446 11790575 ~ 11809016 (-)
LOC113527962 NA non-coding downstream 38417 11619540 ~ 11626068 (-)
G209624 NA non-coding downstream 47297 11610634 ~ 11617188 (-)
G209618 NA non-coding downstream 63241 11600472 ~ 11601244 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding downstream 128788 11531576 ~ 11535697 (-)
G209541 LOC108256081 non-coding downstream 187689 11403078 ~ 11476796 (-)
LOC117598828 NA non-coding upstream 180444 11845573 ~ 11879417 (-)
G209829 NA non-coding upstream 403125 12068254 ~ 12068622 (-)
G209830 NA non-coding upstream 403684 12068813 ~ 12069180 (-)
G209832 NA non-coding upstream 405167 12070296 ~ 12070602 (-)
G209839 NA non-coding upstream 411543 12076672 ~ 12077073 (-)
hmox1a hmox1,LOC108432221 other downstream 16488 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1193967 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1931919 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2190007 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 2244901 9409804 ~ 9419584 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 34720 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 632647 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 668725 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 881204 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1725487 13390616 ~ 13395457 (-)

Expression


Co-expression Network