G209798


Basic Information

Item Value
gene id G209798
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12061569 ~ 12061782 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248507
GTTAATTGGCTTTGCTACTCTCTGGTCTTACACTGAACaatctattaaaaatatatggGACAATTTTGCATCTATGTTGAAGAAACTGAAAAGAATTGTGGGTGCCAAGTCCTCTATTCACGGTTCTCTTCAGTCCATGAATTGGCTTAATCTGATTTTCAGACCTCATAAAGTTTGTTGCCTGACATGTCATACATAATTATATTGGTCTTAA

Function

NR:

description
pituitary homeobox 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248507 True 214 lncRNA 0.35 1 12061569 12061782

Neighbor

gene id symbol gene type direction distance location
gaa gaa,LOC106601771 coding upstream 16065 12033886 ~ 12045504 (+)
grin2ca grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244 coding upstream 141906 11861586 ~ 11919663 (+)
rfx1a LOC108260824,LOC108432209 coding upstream 211233 11830043 ~ 11850336 (+)
s1pr5a s1pr5a,LOC108260797,LOC108432217 coding upstream 318496 11739620 ~ 11743073 (+)
si:dkeyp-69e1.8 LOC108278349 coding upstream 384108 11671706 ~ 11677461 (+)
cbx4 cbx4,LOC108260285 coding downstream 54657 12116439 ~ 12122136 (+)
cbx8a cbx8,LOC108261002,LOC107085518 coding downstream 67809 12129591 ~ 12132297 (+)
narfl narfl,LOC106606697 coding downstream 202923 12264705 ~ 12272091 (+)
fahd1 fahd1 coding downstream 225438 12287220 ~ 12288452 (+)
LOC113528323 LOC108258986 coding downstream 279168 12340950 ~ 12356527 (+)
G209775 NA non-coding upstream 40437 12019863 ~ 12021132 (+)
LOC113528367 NA non-coding upstream 238659 11808261 ~ 11822910 (+)
G209410 NA non-coding upstream 352633 11708728 ~ 11708936 (+)
G209392 NA non-coding upstream 427088 11633912 ~ 11634481 (+)
G209390 NA non-coding upstream 443335 11618035 ~ 11618234 (+)
G209863 NA non-coding downstream 71478 12133260 ~ 12133471 (+)
G209884 NA non-coding downstream 139456 12201238 ~ 12202277 (+)
G209886 NA non-coding downstream 146454 12208236 ~ 12208486 (+)
G209887 NA non-coding downstream 147104 12208886 ~ 12209124 (+)
G209894 NA non-coding downstream 157519 12219301 ~ 12219553 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 483746 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 673549 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 1280110 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 2073796 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2998156 9061563 ~ 9063413 (+)
LOC113528416 LOC108275780 other downstream 73487 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 96921 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 305784 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1373599 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 1402303 13464085 ~ 13493942 (+)

Expression


Co-expression Network