G209829


Basic Information

Item Value
gene id G209829
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12068254 ~ 12068622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248548
ATAGGGCAGAGTATAGCGTTGCTGCTTTAGCATCACACCTGAAAAAGAGCCGTAGGGACCGCATGTGTCCCAGGTCCACTCGaaacacaccacacagctgTTCTACAGCCAGAACCTTCTGCTGCTCCTCCCAGCGCATGCCCTGCGACTGACTGCTCTCCGAAAGGGCGTGGCTGTCCAAACTGGAGGCGGAGCTTGCAGAGTGAGTCATGGACTCATCACACATCTCCCTGAAAATGAGACCATAATTATATTCCATCCAACACAGTATACCTGCCAATATAAACAGTTAGCTGAcaaaaagaaagcagcagacATCTGTGGTTGTTGCATTAGTCACTGTTGCTGGGTACTATGACACAGGTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248548 True 369 lncRNA 0.50 1 12068254 12068622

Neighbor

gene id symbol gene type direction distance location
tnpo2 tnpo2,LOC108432206 coding downstream 35496 12015201 ~ 12032758 (-)
LOC113528656 NA coding downstream 42682 12025502 ~ 12025572 (-)
tmem104 tmem104,LOC107568246 coding downstream 55278 11963695 ~ 12012976 (-)
rln3a LOC108258150 coding downstream 240147 11826285 ~ 11828107 (-)
il12rb2l NA coding downstream 242475 11810207 ~ 11825779 (-)
LOC113528185 LOC108275528,LOC103031371 coding upstream 78874 12147496 ~ 12153883 (-)
slc5a11 slc5a11,LOC107670676 coding upstream 121450 12190072 ~ 12200474 (-)
grid2ipa grid2ipa,LOC108432200,LOC107583579,LOC107758114,LOC107670677,LOC107728614,LOC107689997,LOC107559228 coding upstream 133346 12201968 ~ 12236027 (-)
e4f1 e4f1 coding upstream 170514 12239136 ~ 12248090 (-)
zgc:113333 NA coding upstream 182062 12250684 ~ 12261251 (-)
LOC117598828 NA non-coding downstream 188837 11845573 ~ 11879417 (-)
G209646 hmgxb4 non-coding downstream 403125 11664485 ~ 11665129 (-)
LOC113527962 NA non-coding downstream 442186 11619540 ~ 11626068 (-)
G209624 NA non-coding downstream 451066 11610634 ~ 11617188 (-)
G209618 NA non-coding downstream 467010 11600472 ~ 11601244 (-)
G209830 NA non-coding upstream 191 12068813 ~ 12069180 (-)
G209832 NA non-coding upstream 1674 12070296 ~ 12070602 (-)
G209839 NA non-coding upstream 8050 12076672 ~ 12077073 (-)
G209835 NA non-coding upstream 15114 12083736 ~ 12084702 (-)
G209868 NA non-coding upstream 66886 12135508 ~ 12135919 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 367082 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 420257 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1597736 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2335688 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2593776 9464331 ~ 9474478 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 229154 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 265232 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 477711 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1321994 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1326844 13395466 ~ 13399225 (-)

Expression


Co-expression Network