G209832


Basic Information

Item Value
gene id G209832
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12070296 ~ 12070602 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248551
ACCTACGTTGCTATATCAGAAATTCTAAATTCAATTTCTAAACAGTTGGTGTGATTAACAGCCACAGTCTCACCTTCCTGAGCTTGTACTCCTCCTCCACTTGACCGTTGTGGTTCAGGTGCCGCAGCCAGGAGCTGACATCCAGTCTCCGGTAGAGACGTTCCTCCGGGTGAGTCTCCGTGGACGGAAGAGTGGGTCTGCGGATGGAGAACTGCATGCACGACTTCTCATCCGCCACCTGAGCACAAGATTTAGAACGAAAGAGGTTGGAGAGACTTCGCTGGAAGGCTTTCAAACcagattagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248551 True 307 lncRNA 0.50 1 12070296 12070602

Neighbor

gene id symbol gene type direction distance location
tnpo2 tnpo2,LOC108432206 coding downstream 37538 12015201 ~ 12032758 (-)
LOC113528656 NA coding downstream 44724 12025502 ~ 12025572 (-)
tmem104 tmem104,LOC107568246 coding downstream 57320 11963695 ~ 12012976 (-)
rln3a LOC108258150 coding downstream 242189 11826285 ~ 11828107 (-)
il12rb2l NA coding downstream 244517 11810207 ~ 11825779 (-)
LOC113528185 LOC108275528,LOC103031371 coding upstream 76894 12147496 ~ 12153883 (-)
slc5a11 slc5a11,LOC107670676 coding upstream 119470 12190072 ~ 12200474 (-)
grid2ipa grid2ipa,LOC108432200,LOC107583579,LOC107758114,LOC107670677,LOC107728614,LOC107689997,LOC107559228 coding upstream 131366 12201968 ~ 12236027 (-)
e4f1 e4f1 coding upstream 168534 12239136 ~ 12248090 (-)
zgc:113333 NA coding upstream 180082 12250684 ~ 12261251 (-)
G209830 NA non-coding downstream 1116 12068813 ~ 12069180 (-)
G209829 NA non-coding downstream 1674 12068254 ~ 12068622 (-)
LOC117598828 NA non-coding downstream 190879 11845573 ~ 11879417 (-)
G209646 hmgxb4 non-coding downstream 405167 11664485 ~ 11665129 (-)
LOC113527962 NA non-coding downstream 444228 11619540 ~ 11626068 (-)
G209839 NA non-coding upstream 6070 12076672 ~ 12077073 (-)
G209835 NA non-coding upstream 13134 12083736 ~ 12084702 (-)
G209868 NA non-coding upstream 64906 12135508 ~ 12135919 (-)
G209946 NA non-coding upstream 87468 12158070 ~ 12159112 (-)
G209951 NA non-coding upstream 102852 12173454 ~ 12174407 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 369124 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 422299 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1599778 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2337730 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2595818 9464331 ~ 9474478 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 227174 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 263252 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 475731 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1320014 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1324864 13395466 ~ 13399225 (-)

Expression


Co-expression Network