G209884


Basic Information

Item Value
gene id G209884
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12201238 ~ 12202277 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248618
aagatttccattttcattttctcataaaaaacaacaaaaaacaaacaaacaaataacttctGTTCTATTGTACATTCAGCATTTGATAAAGCAAATACctaatttggcaaaaaaaaaaaaagagggaaaaaaaccttGGTATaacaatgaatttaaaaaaagcagtttggCCACACGCTAATGGCTAAATGTAAACCtgcatatacatacattcattATGGATGACCACAAAAAGAGTACAGAAGAAAACTTATCTAATTCTCTCATAAGTACATCTGATATGTCATACTACAATAAAAACTACCTATAGTAGTTATAAACTCTTACAATAACTCTTAtaatatgcatttatttcatatattgcATGTGAGATTGCACCCTACTATATAAGGAATCACTTTATTAGTTAAAACTTTAATTagaataatcataaatcaatttTATATCTCTATAAGAAATATAGTATGTTATATCCCAAAGTGTCCAAGGTCTATGTAAATACATTCTACAGTAGAAGAATCAATGTAATCTGTTAAACAAAGCCCTCATGAATTAACATGTAAGCGCATTTATATCCAAAACAACACCAGGTATTTCATTTGTGCAGAATTTCATTCACAGTTCTGTTCACATTCCACAGCTGATTTAGTACCATATCTAAGTTTGTGTGTACATTAAAAGTCACACTGTATAATGCAACTACAATCTTTCAACCTAAGACatgtttttagttgttttttttttttagtttgaacATGTTCCAAAAAATCCATGTAGCCTATGTAGCTCAAAAATGTGTGAAGTGAAGTCAGTATGAGAGCATATGTACAGGAACAGTTTTTCCAGGTATGCCTGGATTTGTTAGTAGTCTTTTAGTGTATGTACAATGTACATTGggtatgaatatgtgtgtactttatataaatgtgtatacagtatgtgcatgtgtgtgtttgtgtgtcccgTCACCATGCTAAGGGAGACGCCATACGAGGACTGCGTGGGCTGCGTGGAGGATTCTCAGTGGCCTGGTTCTCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248618 True 1040 lncRNA 0.32 1 12201238 12202277

Neighbor

gene id symbol gene type direction distance location
cbx8a cbx8,LOC108261002,LOC107085518 coding upstream 68941 12129591 ~ 12132297 (+)
cbx4 cbx4,LOC108260285 coding upstream 79102 12116439 ~ 12122136 (+)
gaa gaa,LOC106601771 coding upstream 155734 12033886 ~ 12045504 (+)
grin2ca grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244 coding upstream 281575 11861586 ~ 11919663 (+)
rfx1a LOC108260824,LOC108432209 coding upstream 350902 11830043 ~ 11850336 (+)
narfl narfl,LOC106606697 coding downstream 62428 12264705 ~ 12272091 (+)
fahd1 fahd1 coding downstream 84943 12287220 ~ 12288452 (+)
LOC113528323 LOC108258986 coding downstream 138673 12340950 ~ 12356527 (+)
kdelr2a erd22,kdelr2a,LOC108432184,LOC107670681,LOC107555655,LOC107728665 coding downstream 183698 12385975 ~ 12389435 (+)
spag9a LOC108257234,LOC108432181 coding downstream 194227 12396504 ~ 12435649 (+)
G209863 NA non-coding upstream 67767 12133260 ~ 12133471 (+)
G209798 NA non-coding upstream 139456 12061569 ~ 12061782 (+)
G209775 NA non-coding upstream 180106 12019863 ~ 12021132 (+)
LOC113528367 NA non-coding upstream 378328 11808261 ~ 11822910 (+)
G209410 NA non-coding upstream 492302 11708728 ~ 11708936 (+)
G209886 NA non-coding downstream 5959 12208236 ~ 12208486 (+)
G209887 NA non-coding downstream 6609 12208886 ~ 12209124 (+)
G209894 NA non-coding downstream 17024 12219301 ~ 12219553 (+)
G209897 grid2ipa,LOC107758114,LOC107583579,LOC107559228,LOC107689997,LOC107728614,LOC107670677 non-coding downstream 30044 12232321 ~ 12232651 (+)
G209943 NA non-coding downstream 173630 12375907 ~ 12378084 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 11168 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 60867 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 115180 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 623415 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 813218 11280080 ~ 11388020 (+)
ndufb10 ndufb10 other downstream 165289 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1233104 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 1261808 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 2416927 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 2785809 14988086 ~ 14991450 (+)

Expression


Co-expression Network