G209897 (grid2ipa,LOC107758114,LOC107583579,LOC107559228,LOC107689997,LOC107728614,LOC107670677)


Basic Information

Item Value
gene id G209897
gene name grid2ipa,LOC107758114,LOC107583579,LOC107559228,LOC107689997,LOC107728614,LOC107670677
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12232321 ~ 12232651 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248631
TCTTGTTAAACTCCAGGGCTTTGTGTTTGCGGTCCTGACGGACTATATCTCCACTCTGGTAGGTTTCTTTCATGCTGCTGCTGGTGCGTTTTTGCCAacggttcattctgagcacaccAAGGCGCAGTGTACGCCCCTGCGATGCCTTAATCATGGCTGCCGCCATCTCATGGTGCTTCACTGGAATTCCATTCACCTCCATCACATAGTCCCCTGCCCGTAACCCGCTGCGGCCCGCTGGAGAGTTGAGCATGCAGTCCTCCACCAACAAGGGGCAATCTCCAACAATGGTGAAGCCAAAGCGGCCGTCAGGTCCTGGGGTGATGTCCAA

Function

symbol description
grid2ipa Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Orthologous to human GRID2IP (Grid2 interacting protein).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248631 True 331 lncRNA 0.55 1 12232321 12232651

Neighbor

gene id symbol gene type direction distance location
cbx8a cbx8,LOC108261002,LOC107085518 coding upstream 100024 12129591 ~ 12132297 (+)
cbx4 cbx4,LOC108260285 coding upstream 110185 12116439 ~ 12122136 (+)
gaa gaa,LOC106601771 coding upstream 186817 12033886 ~ 12045504 (+)
grin2ca grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244 coding upstream 312658 11861586 ~ 11919663 (+)
rfx1a LOC108260824,LOC108432209 coding upstream 381985 11830043 ~ 11850336 (+)
narfl narfl,LOC106606697 coding downstream 32054 12264705 ~ 12272091 (+)
fahd1 fahd1 coding downstream 54569 12287220 ~ 12288452 (+)
LOC113528323 LOC108258986 coding downstream 108299 12340950 ~ 12356527 (+)
kdelr2a erd22,kdelr2a,LOC108432184,LOC107670681,LOC107555655,LOC107728665 coding downstream 153324 12385975 ~ 12389435 (+)
spag9a LOC108257234,LOC108432181 coding downstream 163853 12396504 ~ 12435649 (+)
G209894 NA non-coding upstream 12768 12219301 ~ 12219553 (+)
G209887 NA non-coding upstream 23197 12208886 ~ 12209124 (+)
G209886 NA non-coding upstream 23835 12208236 ~ 12208486 (+)
G209884 NA non-coding upstream 30044 12201238 ~ 12202277 (+)
G209863 NA non-coding upstream 98850 12133260 ~ 12133471 (+)
G209943 NA non-coding downstream 143256 12375907 ~ 12378084 (+)
G209944 NA non-coding downstream 145508 12378159 ~ 12378413 (+)
G209945 NA non-coding downstream 146295 12378946 ~ 12380986 (+)
G210086 NA non-coding downstream 313782 12546433 ~ 12548503 (+)
G210160 NA non-coding downstream 546598 12779249 ~ 12780136 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 42251 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 91950 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 146263 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 654498 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 844301 11280080 ~ 11388020 (+)
ndufb10 ndufb10 other downstream 134915 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1202730 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 1231434 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 2386553 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 2755435 14988086 ~ 14991450 (+)

Expression


Co-expression Network