G209984


Basic Information

Item Value
gene id G209984
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12333454 ~ 12333662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248758
GCCTGAGTTAATATTAGTTTATAAAAAACTACATTCAAGATTCATTTCATGATTGCAGAATCTCGTATAGACTGTTACACTCactgtacagtgaaattcttacTCTGCATTCCTTCCATTCACCATCAGTACTATACATGGATTATAAGTTAGttagttatactgtatactgcataCTGTAAGTTAATTTACAGACTTTTGACTTTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248758 True 209 lncRNA 0.31 1 12333454 12333662

Neighbor

gene id symbol gene type direction distance location
LOC113528334 hagh,LOC105892024,LOC106606699 coding downstream 46316 12280033 ~ 12287138 (-)
hagh haghl,LOC108432196,LOC104918824,LOC103393077,LOC101076411 coding downstream 54863 12272170 ~ 12278591 (-)
zgc:113333 NA coding downstream 72203 12250684 ~ 12261251 (-)
e4f1 e4f1 coding downstream 85364 12239136 ~ 12248090 (-)
grid2ipa grid2ipa,LOC108432200,LOC107583579,LOC107758114,LOC107670677,LOC107728614,LOC107689997,LOC107559228 coding downstream 97427 12201968 ~ 12236027 (-)
LOC113528330 rpl3l coding upstream 22962 12356624 ~ 12363766 (-)
rps2 rps2,LOC107690003,LOC107758112 coding upstream 37871 12371533 ~ 12374265 (-)
si:ch211-139g16.8 NA coding upstream 42231 12375893 ~ 12381034 (-)
LOC113528448 tmem159 coding upstream 56044 12389706 ~ 12394578 (-)
wfikkn2a wfikkn2,LOC103032076,LOC107690026,LOC107758109,LOC107555656,LOC107670669,LOC107583670 coding upstream 192678 12526340 ~ 12530301 (-)
G209961 NA non-coding downstream 96262 12236974 ~ 12237192 (-)
G209951 NA non-coding downstream 159047 12173454 ~ 12174407 (-)
G209946 NA non-coding downstream 174342 12158070 ~ 12159112 (-)
G209868 NA non-coding downstream 197535 12135508 ~ 12135919 (-)
G209835 NA non-coding downstream 248752 12083736 ~ 12084702 (-)
LOC117598772 NA non-coding upstream 112799 12446461 ~ 12463878 (-)
G210123 NA non-coding upstream 252769 12586431 ~ 12587089 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding upstream 533928 12867590 ~ 12868480 (-)
G210349 kpna2,LOC108261381,LOC108432045,LOC106607066 non-coding upstream 535590 12869252 ~ 12870186 (-)
G210350 NA non-coding upstream 588275 12921937 ~ 12923464 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 17956 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 632282 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 685457 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1862936 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2600888 9729851 ~ 9732566 (-)
msrb1a msrb1 other upstream 192 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 212671 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1056954 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1061804 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 1507504 13841166 ~ 13871131 (-)

Expression


Co-expression Network