msrb1a (msrb1)


Basic Information

Item Value
gene id msrb1a
gene name msrb1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12333854 ~ 12339269 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248759
TCAAATCGTGGAGCGTGGTCGCGCGACGGTCAcatcgcgtgtgtgtgtgtgtgttgttgtagaAGTTTGGTGCTGAAACGTAGCGCGCGACGGTGCTCTGTAGCCATGGCTTTTTGTTCCTTTGCCGGAGGAGAGATCTTTAAAGATCACTTCGAAGCGGGTATCTATGTTTGTGTAAAGTGTGGATATGAGCTGTTCTCCAGCACAAAGAAGTATAACCATTCCTCTCCCTGGCCTGCCTTCACTGAAACTATCCACGAGGATAGTGTCTCCAAAATGGAGGAGAGACCTGGTGCACTGAAGATTCGTTGTGGGAAGTGTAAAAATGGCCTGGGTCATGAGTTTCTGAACGACGGACCCAAGCGTGGACTCTCACGATTCTGAATATTCAGCAGCTCACTCAAGTTTGTCCCTAAAGAGAAGGGTGGACAGTAGAGTGAGCTGATGGATGGAGAAGTGAAGATGACATAAAAATGTACAGAGGGACTCTGTTCTGTGGAAGATGTGGACATTTCGTGAAGTGTTGTGCTACAAAGCCCACAGTGGAAGTCAGAACACTGATATTTATGGCCACACTGGTACAGAAAGGACAAGTCTGCTCCTAGTCACTATGTGCTAAAGTCTGTTCTTAGTCAATATCAGTACACACCAAAAATGAATATAGATGTAATATCTATGACATTTCTTAATAGATAGGCTGTTTTATGTAAGCACTTATAAGATTGTAAATAAATCCTTGcattaaaactgatttaaaaaatagcacCAAGCAGAAGATAATGTTTTGTACTCTGGTGTTTGCTGAGAAAATCGTTGATTATGTTTTACACAGTTATTTGACAGTGTTGCACTAAGAAATCAATTTGTTCACAAATCTGAAGGCCTAAGAATAAAGTTTTTAGcatataaaga
>XM_026916839.2
CGTGGAGCGTGGTCGCGCGACGGTCAcatcgcgtgtgtgtgtgtgtgttgttgtagaAGTTTGGTGCTGAAACGTAGCGCGCGACGGTGCTCTGTAGCCATGGCTTTTTGTTCCTTTGCCGGAGGAGAGATCTTTAAAGATCACTTCGAAGCGGGTATCTATGTTTGTGTAAAGTGTGGATATGAGCTGTTCTCCAGCACAAAGAAGTATAACCATTCCTCTCCCTGGCCTGCCTTCACTGAAACTATCCACGAGGATAGTGTCTCCAAAATGGAGGAGAGACCTGGTGCACTGAAGATTCGTTGTGGGAAGTGTAAAAATGGCCTGGGTCATGAGTTTCTGAACGACGGACCCAAGCGTGGACTCTCACGATTCTGAATATTCAGCAGCTCACTCAAGTTTGTCCCTAAAGAGAAGGGTGGACAGTAGAGTGAGCTGATGGATGGAGAAGTGAAGATGACATAAAAATGTACAGAGGGACTCTGTTCTGTGGAAGATGTGGACATTTCGTGAAGTGTTGTGCTACAAAGCCCACAGTGGAAGTCAGAACACTGATATTTATGGCCACACTGGTACAGAAAGGACAAGTCTGCTCCTAGTCACTATGTGCTAAAGTCTGTTCTTAGTCAATATCAGTACACACCAAAAATGAATATAGATGTAATATCTATGACATTTCTTAATAGATAGGCTGTTTTATGTAAGCACTTATAAGATTGTAAATAAATCCTTGcattaaaactgatttaaaaaatagcacCAAGCAGAAGATAATGTTTTGTACTCTGGTGTTTGCTGAGAAAATCGTTGATTATGTTTTACACAGTTATTTGACAGTGTTGCACTAAGAAATCAATTTGTTCACAAATCTGAAGGCCTAAGAATAAAGTTTTTAGcatataaagagaaa

Function

symbol description
msrb1 Predicted to enable actin binding activity; peptide-methionine (R)-S-oxide reductase activity; and zinc ion binding activity. Predicted to be involved in actin filament polymerization; innate immune response; and protein repair. Located in nucleoplasm.

NR:

description
PREDICTED: methionine-R-sulfoxide reductase B1

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030041 actin filament polymerization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248759 True 912 TUCP 0.42 4 12333858 12339269
XM_026916839.2 False 910 mRNA 0.42 4 12333854 12339263

Neighbor

gene id symbol gene type direction distance location
LOC113528334 hagh,LOC105892024,LOC106606699 coding downstream 46716 12280033 ~ 12287138 (-)
hagh haghl,LOC108432196,LOC104918824,LOC103393077,LOC101076411 coding downstream 55263 12272170 ~ 12278591 (-)
zgc:113333 NA coding downstream 72603 12250684 ~ 12261251 (-)
e4f1 e4f1 coding downstream 85764 12239136 ~ 12248090 (-)
grid2ipa grid2ipa,LOC108432200,LOC107583579,LOC107758114,LOC107670677,LOC107728614,LOC107689997,LOC107559228 coding downstream 97827 12201968 ~ 12236027 (-)
LOC113528330 rpl3l coding upstream 17355 12356624 ~ 12363766 (-)
rps2 rps2,LOC107690003,LOC107758112 coding upstream 32264 12371533 ~ 12374265 (-)
si:ch211-139g16.8 NA coding upstream 36624 12375893 ~ 12381034 (-)
LOC113528448 tmem159 coding upstream 50437 12389706 ~ 12394578 (-)
wfikkn2a wfikkn2,LOC103032076,LOC107690026,LOC107758109,LOC107555656,LOC107670669,LOC107583670 coding upstream 187071 12526340 ~ 12530301 (-)
G209984 NA non-coding downstream 192 12333454 ~ 12333662 (-)
G209961 NA non-coding downstream 96662 12236974 ~ 12237192 (-)
G209951 NA non-coding downstream 159447 12173454 ~ 12174407 (-)
G209946 NA non-coding downstream 174742 12158070 ~ 12159112 (-)
G209868 NA non-coding downstream 197935 12135508 ~ 12135919 (-)
LOC117598772 NA non-coding upstream 107192 12446461 ~ 12463878 (-)
G210123 NA non-coding upstream 247162 12586431 ~ 12587089 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding upstream 528321 12867590 ~ 12868480 (-)
G210349 kpna2,LOC108261381,LOC108432045,LOC106607066 non-coding upstream 529983 12869252 ~ 12870186 (-)
G210350 NA non-coding upstream 582668 12921937 ~ 12923464 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 18356 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 632682 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 685857 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1863336 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2601288 9729851 ~ 9732566 (-)
tom1 LOC108260160 other upstream 207064 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1051347 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1056197 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 1501897 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 1654607 13993876 ~ 14001037 (-)

Expression


Co-expression Network