G210086


Basic Information

Item Value
gene id G210086
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12546433 ~ 12548503 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU248885
ACTCACCACAGTTGAACTTGCCTTAACttcaataacatattaaaatgcaaGACTGAAGGACAGCAGTGTTGGGGAGATTACAGGGAAATTGTGTTACTGGTTACTAATGATTATTTAGGAAGTGTAATATAATCTGAGAACTCTTGGACTTATTTTGGACTGCCTTGAATCTAACTGGTTTATTGGTTTCATATACTTCTGTGGAATGAGGAATACATACCTATTACCCCTCTACATGCATTTATTAAAGCCTGCTCAATATTTTTTAGGTAATGTAACATTAAGTACTGAGAATGTCAAATAACACtcctttcattaaaaaaaaagaaaacaaaatgacagGTTTCATCTAAAAGCACTGTGACACAACCGACTCCTTATTGAcatcccacttttttttttgataactaTAACGACACACTCTACAAAGTAACATGGTACATACTATACATGGTATATTAACATTCTATAATCTCgcaatatcataataataaaattaaaaaagggtGACACCAGGACATActcattatttcagaaactagcATTAAAACAACCCATGAACATGTactttttaaaccattaaacaaAACCTATAGTTTGAAAAATAACTATTTGTTTAATATGCTTTTAatttgaaatacacacacaaaaacactccAGGATCTATGAATAAATGTGCAATATGCAAACCAGCTAGATGGCTAGGTAACTGTTAGTAAACTGTAAGATATGTCACAGGTGGACACaagtgggatttcagtatcaGAATCTTGATATCTAAAGTGTATTTTGTATGTAACACTCcctgaattttttaatttatttttttttaaatacagaaaagcTAACACATCAGTGTCTGTTTTTAAATTGAAGAATGTGAACTTTGCACTTTGTTAACATATTTTACCTAAACACCAACCTATAATAATTAGAATCAGCTCAAAACATTACAATCTGTTATTCCTGGGAGCAAACTCTCTGGTACAATATGTCTGGTGTTTTTACCAATTAGCACACATCCTAACCTAAGCTAGCCACATATGTTTACAGAACAGTTTCATTGCCTTCTGCTATTAACAGTTAGCTGAGATGACTAGATGTATTGCAAAGAAAAGAGTACAGTCAAATCAAAAAGGCTCACAAAGTCATTTAGACACCAGCCTAGAGCTCTAAAAATACATAACAGATCTCATACATAGGGACTTAAATAAATAGCAAAGTGTGATAAAAATAGACAATAAATTAACATTGCAGTAGATAGCTAGTAGATAACTAGCGAACCCTTTCTCTGATGTTAGCTCAGTTATAGCACTCTCAATAAATTACAGATTATTAGACTGATTCATTTATGCATAAATGTAACCAAATAATCCATTAAAAAGTAACTAGTTTGATCATGTGTATTttcaaatgtattattttttgtaattagATAATATAATCCAGACTGCATGTAGTCTCCTTGGTAGATATGGCACCACCTACACTGAGCCTGGATCTGAACCACTTGCAGATGCCAATCACTATAGTGGGCAGCCATTCTCATAgacatatccatccatccatccatccatccttcagTAATGGTTttatccggagcctatcccaggactGCAGGAATGCACCCCGATTGGATCGCCagtacatcacagggcaccacattcacacactcattcacacctagaggcaatttagcatagccaatctggcgtgtttttgggagatggaagGAAATCTGAGTACCAGGAAAACCCACCAACAGTAACCAGATCTTaagattgaaccagggaccctggaactctgaggcagcaatgctattTATGCTTGTCCTGCCTTAAAAACAGTTTGTGAGGACTGAGTATAACTTATACATTTGAAAATTAGTTTGTTCTGTTCTGTCACCAAAAGGACCACAAAACCTTTGGGCATCTTTCATGCCCAAATCAAGGATAGCCATAATTCCACTCCTTGTATAAGATAAAACACCTAATAGCTTGGTGAAATTGAGAATGACATTAAATCAGTGCCACAAACCTAAAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248885 True 2046 lncRNA 0.35 2 12546433 12548503

Neighbor

gene id symbol gene type direction distance location
tob1a tob1,LOC108432179,LOC107690006,LOC107555665,LOC104949960,LOC107758110 coding upstream 55486 12487277 ~ 12490947 (+)
spag9a LOC108257234,LOC108432181 coding upstream 110784 12396504 ~ 12435649 (+)
kdelr2a erd22,kdelr2a,LOC108432184,LOC107670681,LOC107555655,LOC107728665 coding upstream 156998 12385975 ~ 12389435 (+)
LOC113528323 LOC108258986 coding upstream 189906 12340950 ~ 12356527 (+)
fahd1 fahd1 coding upstream 257981 12287220 ~ 12288452 (+)
ntn1b ntn1,LOC107728387,LOC107583316,LOC107672692,LOC107719327 coding downstream 67781 12616284 ~ 12661616 (+)
usp43b usp43,LOC108432083,LOC107583297 coding downstream 146866 12695369 ~ 12775815 (+)
grb2b grb2b,grb2,LOC108256494,LOC107719324,LOC107672691,LOC108432081,LOC107723603,LOC107672145,LOC105013161 coding downstream 235794 12784297 ~ 12817380 (+)
bptf LOC108279852,LOC108432079 coding downstream 281692 12830195 ~ 12862010 (+)
kpna2 kpna2,LOC108261381,LOC108432045 coding downstream 319022 12867525 ~ 12872850 (+)
G209945 NA non-coding upstream 165447 12378946 ~ 12380986 (+)
G209944 NA non-coding upstream 168020 12378159 ~ 12378413 (+)
G209943 NA non-coding upstream 168349 12375907 ~ 12378084 (+)
G209897 grid2ipa,LOC107758114,LOC107583579,LOC107559228,LOC107689997,LOC107728614,LOC107670677 non-coding upstream 313782 12232321 ~ 12232651 (+)
G209894 NA non-coding upstream 326880 12219301 ~ 12219553 (+)
G210160 NA non-coding downstream 230746 12779249 ~ 12780136 (+)
G210209 NA non-coding downstream 272573 12821076 ~ 12821284 (+)
G210384 NA non-coding downstream 496487 13044990 ~ 13045833 (+)
G210532 NA non-coding downstream 817181 13365684 ~ 13365893 (+)
G210655 NA non-coding downstream 911476 13459979 ~ 13460490 (+)
ndufb10 ndufb10 other upstream 172061 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 356363 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 406062 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 460375 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 968610 11567119 ~ 11577823 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 886878 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 915582 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 2070701 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 2439583 14988086 ~ 14991450 (+)
G211913 NA other downstream 3369714 15918217 ~ 15968759 (+)

Expression


Co-expression Network