G210348 (LOC108257112)


Basic Information

Item Value
gene id G210348
gene name LOC108257112
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12926645 ~ 12928808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249177
ATGATTAGAAGTATTAATACATGATCCATTCAGAGAAGTAAAGATCACAAAGACAATGTgggcattttgttttatttaagggCCATGTAATGGCCCGGAATAATATCTGaaagtttaaatttataataaatggatgaaacCAGTACAAAAAGTGTAATatggaatataaaaaaaaaaataaaataatccacaaaAGTGCACCATCACTACTGCTGCACTGCAGACTTTAGGACACGAAGATGGAAAACAAATCCTGTTCATGATGGAACAGTTATGAAATATGGAAGTTACACAAGGCAATAAATTATACTGTGCGTATACAGATGTGTGCGTGAGTTTATCTAGGGAAAGTTAGGAGGGGGCATGGAAAAGGGCATCATGGGCTGCATTGGCTGCTGCTGAGGGTTGAAGGGAAACTGTGCGTTGTgatttgcaccattctgagcgGTACCCTGGTTGGCACCAAACTGCTTGTTCTGGAAACTCTGGTTTCCAAAGCTACCAGCCTGATTGCCATTAAAGTTGGACTGTCCATTGTAAGCCCCATTAAAGCCATTATTGCTGTTTCCATTGTAATTGCTGGCCCCATTACTGTAtgttgcaccattctgtgtctTGTTACTGAAGGCTTTCTTTGGTCCATTGTCGTAACTGCGATCACTTCCACGACTGTCTTGGCTGTAGTTATAGTCCCGTCTGCCTCCGGAGTACCGATCCCGGCGATCATCTCTATACCCGCCACCTCGACCGCCCCTTGAACGACCTCCTCTGTCTTCTGCCATCTGGATGAGTTTGGGATTGATGGCCTGGTTGGCTTCACGGAGGACAGAGACAAGGTCTTGCGCTTGCTTAAAGTTGTTAGGTGTGAAGAAGGTGTAGGCTGTTCCAGTTTTCTGGCTACGTGCCGTGCGGCCAATGCGGTGGATGTAGTCCTCAGAGTTGTTGGGATAATCGAAATTAATTACAAACTTGACATCCTCGACATCTGTGGGAATGATTGTGATGCAGTGCGGTGGAAAGGGAGCAAAGTATGCACACCACCACAGCAGCAAAGAGacattaatacataataattaaCAGAAAGGTATGTACTTACCAAATTGGAAAGATCATTTTAACATCAATTTTAACAGTCAAGCAAGGTTATGTCCCATGAATCTCTCCAGCTGAGTCTTGAAGCAATTACACTGATCTCCCCACAGGTTTAACTGACAGTCAGGTGCTTCCCATCAATAGGCCTTAAAGCACATTTTGCTTCATAACACAGATGCAAACACTACCTACAGACTTCAGGACAACTGAAGTCCAATTGTTGCATCTTGCTTGAAATTAACCATGAAAGACTGGCTCAGATTTTACAATATTAGACAAGGCATAGTTTTTCCCAGTCAAGCAGTGGTCACTTGACAGGGTCTCTCTTTGGCAGGACTCGACATGATCGAAGCCAGAACAGGAGGGAACTCCTCAGCTAGCCTGGGAATCGCATTCAGTACAGAGGCGTGCACATAACCAACAGCTGCTCTCATTTCAAAGGCCAAATAGTGTGGAAGCAGCCCCATCGAGTGAGACCTCAAAAACTTTCCACAGTTGCAGCTGTAGCTATGCAAGAGCAAGAGAGTAGGAGCCACCGCAGCCATCCCACAATGCCACGCTCCTCATTGGCTGGCGAGTGCACCAGGGGCCCGAGAACTCCCAACACCTCTGTACACGATTTGATTGGCTGGCAGAAAAGGCAGAACTCCAGCAAAGGAGTGCCAGACCCCTCCGGAGACTCTGGTCACGTCATGCCAAGGTCCTGCCTCCAAGACTGCACCTTTAGGTGAGGGATAACTCAGAGAGAGGGACAGCAgtttaaaattctacatgaaAACTACTAAAATTTAACAATACAGCACTCATGAGTCTGTAATAgcacaaaaatatacataccTAGACCTCTTGATGCCACGTCAGTAGCAATTAGAATGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249177 True 1970 lncRNA 0.45 2 12926645 12928808

Neighbor

gene id symbol gene type direction distance location
trnas-aga_12 NA coding downstream 100106 12826458 ~ 12826539 (-)
pik3r6b LOC108260485 coding downstream 313719 12593577 ~ 12612926 (-)
mfsd6l mfsd6l coding downstream 335140 12587675 ~ 12591505 (-)
zgc:171844 LOC108260146,LOC108432048,LOC100703987,LOC106607059 coding downstream 343279 12562950 ~ 12583366 (-)
ankrd40 ankrd40 coding downstream 383583 12537412 ~ 12543062 (-)
ilf3b ilf3,LOC106601349 coding upstream 118511 13047319 ~ 13063983 (-)
gcdhb gcdh,LOC107718595,LOC107653471,LOC107563244 coding upstream 167451 13096259 ~ 13104838 (-)
nfil3-2 nfil3 coding upstream 281561 13210369 ~ 13220022 (-)
nfil3-6 LOC108279453 coding upstream 294436 13223244 ~ 13226875 (-)
LOC113528569 NA coding upstream 313042 13241850 ~ 13268174 (-)
G210350 NA non-coding downstream 3181 12921937 ~ 12923464 (-)
G210349 kpna2,LOC108261381,LOC108432045,LOC106607066 non-coding downstream 56459 12869252 ~ 12870186 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding downstream 58165 12867590 ~ 12868480 (-)
G210123 NA non-coding downstream 339556 12586431 ~ 12587089 (-)
LOC117598772 NA non-coding downstream 462767 12446461 ~ 12463878 (-)
LOC117598834 LOC108256185 non-coding upstream 18502 12947310 ~ 12949117 (-)
LOC113527982 NA non-coding upstream 51157 12979965 ~ 13020678 (-)
G210412 NA non-coding upstream 105320 13034128 ~ 13034852 (-)
G210427 NA non-coding upstream 149191 13077999 ~ 13078945 (-)
G210435 NA non-coding upstream 166436 13095244 ~ 13095477 (-)
tom1 LOC108260160 other downstream 367432 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 587376 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 611147 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 1225473 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 1278648 11642157 ~ 11647997 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 461808 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 466658 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 912358 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 1065068 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 1075361 14004169 ~ 14006512 (-)

Expression


Co-expression Network