G210349 (kpna2,LOC108261381,LOC108432045,LOC106607066)


Basic Information

Item Value
gene id G210349
gene name kpna2,LOC108261381,LOC108432045,LOC106607066
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12869252 ~ 12870186 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249178
AAGCTCTCCAGAGCCAAGCAGCTGTACCAGTCGGGGAACCGACACCAGTCTGGACCACCACTTCAATCCTGTCATTAGGACCGTCGGTCAGGTATGAAACGGCCCAGCAAGTGTCTGCCAGCACCTCCTTATCGTTATGGTGCAGCAGGCGGATGAGGGTGGGCAGGATCTGCTTCACAGCCTCGAGGGGCGGTGCAGGATTCTTGTTGCGACACAGGTTCGACAAAGTCCAGGTGACGTTCCTCAGGTAGCCAGAagCAAACACAGAAAGATCAGGCACAGCAAGTAGACTCAAAAGTGGGGCGATAGCACCATGCTTGATGACCTTATCTCTATACACAGAGCCGTCACCAGCAATATTCCCCAGGGCCCAGACAGCCTGTTCACTAATATGAGAATGAGGTGATGTGATCAGACCGATGAAAGCTGGAATGGCCCCTCCTTCCACCACAGCTGTAGTCTGATCAGACGTCCCAGACGCAATGTTAGTCAGAGCCCAGGCCGCTTCAAACTGAATAGGAGGAGACTGAGACATGCCCAGGAAGCCTACAAACTTGGGAATCAGGCCTGCACTGATGATTCGATCAATGGGTGGATGCCTCTCCCTAGACAGCAGCTTCC

Function

symbol description
kpna2 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Is expressed in proliferative region. Orthologous to human KPNA2 (karyopherin subunit alpha 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249178 True 621 lncRNA 0.54 3 12869252 12870186

Neighbor

gene id symbol gene type direction distance location
trnas-aga_12 NA coding downstream 42713 12826458 ~ 12826539 (-)
pik3r6b LOC108260485 coding downstream 256326 12593577 ~ 12612926 (-)
mfsd6l mfsd6l coding downstream 277747 12587675 ~ 12591505 (-)
zgc:171844 LOC108260146,LOC108432048,LOC100703987,LOC106607059 coding downstream 285886 12562950 ~ 12583366 (-)
ankrd40 ankrd40 coding downstream 326190 12537412 ~ 12543062 (-)
ilf3b ilf3,LOC106601349 coding upstream 177133 13047319 ~ 13063983 (-)
gcdhb gcdh,LOC107718595,LOC107653471,LOC107563244 coding upstream 226073 13096259 ~ 13104838 (-)
nfil3-2 nfil3 coding upstream 340183 13210369 ~ 13220022 (-)
nfil3-6 LOC108279453 coding upstream 353058 13223244 ~ 13226875 (-)
LOC113528569 NA coding upstream 371664 13241850 ~ 13268174 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding downstream 772 12867590 ~ 12868480 (-)
G210123 NA non-coding downstream 282163 12586431 ~ 12587089 (-)
LOC117598772 NA non-coding downstream 405374 12446461 ~ 12463878 (-)
G209984 NA non-coding downstream 535590 12333454 ~ 12333662 (-)
G209961 NA non-coding downstream 632060 12236974 ~ 12237192 (-)
G210350 NA non-coding upstream 51751 12921937 ~ 12923464 (-)
G210348 LOC108257112 non-coding upstream 56459 12926645 ~ 12928808 (-)
LOC117598834 LOC108256185 non-coding upstream 77124 12947310 ~ 12949117 (-)
LOC113527982 NA non-coding upstream 109779 12979965 ~ 13020678 (-)
G210412 NA non-coding upstream 163942 13034128 ~ 13034852 (-)
tom1 LOC108260160 other downstream 310039 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 529983 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 553754 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 1168080 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 1221255 11642157 ~ 11647997 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 520430 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 525280 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 970980 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 1123690 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 1133983 14004169 ~ 14006512 (-)

Expression


Co-expression Network