G210384


Basic Information

Item Value
gene id G210384
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13044990 ~ 13045833 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249234
TTTAGAATGAGATCTATACCAGTGTTGCCATGATACAACATGCATGCCCAAGTTAAGAATAATTGAATAACTatttcactgtttacatttccAATTCTCCAAGTAGCCGGGACTAATTTGGACAAAATTAAACTAATCAGCAATGTCTAAGTAGTGAACTTAGCAGGCATACTCTACTGTGATCATTCTATAACTCTGTAAAGAAACAGCACTTTACTGCGTCTATGGCATTGGGCCACCGTTTACAGagctaataaatgtaattttacatCATATGCAGAAATGGACGACTGAGGAAAATTGCTGACAACAAATACAGGTTACACGCACACCTCTCTGTACATGTGCACTGGCTCAGAAGCAGGTTTAAGCATCACAGAAGCTAACAACAGCAGTTAATTCAGCATTGGATTAATCATATACCCAAACCAATAtttcctctgtacaccaccacaatggatttgaaatgaagcaataaatatttttaatacttggatgcaaatacTTTGCAGGCAATGACTGCcagaaatctggaacccatggacatcaacaaatgctgagtttcctcccttgagatgctttgccaggcctttactgcagctgccttcagttgctgcttgtttgtgggtctttctgccttcagttttgtcttcagtaagtgaaaagcttGCTCAATTGAGTtgaggtcatcagacatttaagaacatttaatatgtcttaagaagctcttgggttgatTTCGCGATACATGTTGGGTCAtgatccatctgtactgtgaagtgctatcctatcagttttgcagcatttgactgaatctgagcaggaAGTATATATATGCTTcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249234 True 844 lncRNA 0.39 1 13044990 13045833

Neighbor

gene id symbol gene type direction distance location
ptger1b LOC108257984 coding upstream 2684 13028820 ~ 13042306 (+)
si:ch211-194b1.1 LOC108256185,LOC108236112,LOC103393718,LOC105929962 coding upstream 81216 12939770 ~ 12963774 (+)
pglyrp6 pglyrp2 coding upstream 109968 12930220 ~ 12935022 (+)
ddx5 ddx5,LOC108257112,LOC108432077,LOC107583258,LOC103024726,LOC107723600,LOC107602339,LOC105013158,LOC107748799,LOC107672127 coding upstream 116238 12922324 ~ 12928752 (+)
smurf2 smurf2,LOC108254810,LOC108432078,LOC107748797,LOC107695141,LOC107723598 coding upstream 124060 12873265 ~ 12920930 (+)
farsa farsa,LOC106601350 coding downstream 19918 13065751 ~ 13078673 (+)
syce2 LOC108258127 coding downstream 37233 13083066 ~ 13094680 (+)
LOC113528074 LOC108256459 coding downstream 64200 13110033 ~ 13142377 (+)
LOC113528311 rgl3,LOC108432062,LOC107653475,LOC107718589,LOC107563227 coding downstream 101470 13147303 ~ 13169715 (+)
plppr2a plppr2a,LOC108274416,LOC108440982,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668 coding downstream 228791 13274624 ~ 13313578 (+)
G210209 NA non-coding upstream 223706 12821076 ~ 12821284 (+)
G210160 NA non-coding upstream 264854 12779249 ~ 12780136 (+)
G210086 NA non-coding upstream 496487 12546433 ~ 12548503 (+)
G209945 NA non-coding upstream 664004 12378946 ~ 12380986 (+)
G209944 NA non-coding upstream 666577 12378159 ~ 12378413 (+)
G210532 NA non-coding downstream 319851 13365684 ~ 13365893 (+)
G210655 NA non-coding downstream 414146 13459979 ~ 13460490 (+)
G210698 NA non-coding downstream 616341 13662174 ~ 13663501 (+)
G210694 LOC108276282 non-coding downstream 619683 13665516 ~ 13669551 (+)
G210719 NA non-coding downstream 649657 13695490 ~ 13695799 (+)
ndufb10 ndufb10 other upstream 670618 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 854920 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 904619 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 958932 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 1467167 11567119 ~ 11577823 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 389548 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 418252 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 1573371 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 1942253 14988086 ~ 14991450 (+)
G211913 NA other downstream 2872384 15918217 ~ 15968759 (+)

Expression


Co-expression Network