G210461


Basic Information

Item Value
gene id G210461
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13171841 ~ 13172066 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249332
catGACTGCTGTGGTGGTTTTGGGGCTATGGTtgcctcatatcatctcggggagtttttccttgccaccgtcgcctctggcttgctcattagggataaattcacacatttacaatttattttgatttaatttaatttgaatgtatttgtttctgtaaagctgctttctgacaatgtccattgttaaaagcgctatacaaataaaattgaattgaattgaagtgaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249332 True 226 lncRNA 0.37 1 13171841 13172066

Neighbor

gene id symbol gene type direction distance location
gcdhb gcdh,LOC107718595,LOC107653471,LOC107563244 coding downstream 67003 13096259 ~ 13104838 (-)
ilf3b ilf3,LOC106601349 coding downstream 107858 13047319 ~ 13063983 (-)
trnas-aga_12 NA coding downstream 345302 12826458 ~ 12826539 (-)
pik3r6b LOC108260485 coding downstream 558915 12593577 ~ 12612926 (-)
mfsd6l mfsd6l coding downstream 580336 12587675 ~ 12591505 (-)
nfil3-2 nfil3 coding upstream 38303 13210369 ~ 13220022 (-)
nfil3-6 LOC108279453 coding upstream 51178 13223244 ~ 13226875 (-)
LOC113528569 NA coding upstream 69784 13241850 ~ 13268174 (-)
swsap1 swsap1 coding upstream 260161 13432227 ~ 13435356 (-)
gadd45gip1 gadd45gip1 coding upstream 322920 13494986 ~ 13498163 (-)
G210436 NA non-coding downstream 76104 13095520 ~ 13095737 (-)
G210435 NA non-coding downstream 76364 13095244 ~ 13095477 (-)
G210427 NA non-coding downstream 92896 13077999 ~ 13078945 (-)
G210412 NA non-coding downstream 136989 13034128 ~ 13034852 (-)
LOC113527982 NA non-coding downstream 151163 12979965 ~ 13020678 (-)
G210570 NA non-coding upstream 138467 13310533 ~ 13354585 (-)
LOC113528601 NA non-coding upstream 197388 13369454 ~ 13372938 (-)
G210607 NA non-coding upstream 233073 13405139 ~ 13405357 (-)
G210640 NA non-coding upstream 273670 13445736 ~ 13446438 (-)
LOC113528343 NA non-coding upstream 291473 13463539 ~ 13475462 (-)
tom1 LOC108260160 other downstream 612628 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 832572 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 856343 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 1470669 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 1523844 11642157 ~ 11647997 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 218550 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 223400 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 669100 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 821810 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 832103 14004169 ~ 14006512 (-)

Expression


Co-expression Network