elof1 (elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163)


Basic Information

Item Value
gene id elof1
gene name elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13390616 ~ 13395457 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249469
ACGCTTTATTAAACCGAGGAAGAATTTATCCGGAAGTTTGTCTTGTGTTTATTCGCCGTGTTGTGTGCTCTTTCTGTATTCTTAACCGAGTAATTTCATATCAATGGGTCGCAGAAAGTCGAAGCGAAAGCCTCCTCCCAAGAAGAAAATGACTGGAAACCTGGACACGCAGTTTACCTGCCCATTCTGTAACCACGAAAAGTCCTGCGATGTTAAAATGGAACGAAGTCGAAACACGGGTATAATATCTTGTACTGTGTGCTTGGAGGAGTTCCAGACTCCCATTACCTATCTCTCCGAACCCGTGGACGTCTACAGTGATTGGATCGATGCTTGCGAAGCAGCCAATCAGTAGCTCATCTCCTAGGATCAGAGGTCACCGAAGACGACACGGCCCTACAAGACTACAAggtgtatttttatatcatgaAATGTATCCTGTAACATCCCATTTGTCTCCTGATGTAAAAGGAATCATTTTCAGTCACGCATAATCACTGTGTTCCCTTTTGTTAGTATTACACAATGTgaagacacaaaggaaactggGTGAATTCGAGAGTTGGTGCATTTGATAATTCCGGTTTAGACCCACACTTTTGAGAATTTGTGAACTTTTAGTTTGTGAACTTTTTGTTGGAGTTCAggtttttatatgtttaatgtttgttgGAGTACATGtcaataaaaatgtgtgcatcTTCCTTGTTAGGAAGTTTGTGA
>XM_026916221.2
GGCGATGGACACTAGATGGCGCTCTACAACACTGTAAACGTCTGCACACGCTTTATTAAACCGAGGAAGAATTTATCCGGAAGTTTGTCTTGTGTTTATTCGCCGTGTTGTGTGCTCTTTCTGTATTCTTAACCGAGTAATTTCATATCAATGGGTCGCAGAAAGTCGAAGCGAAAGCCTCCTCCCAAGAAGAAAATGACTGGAAACCTGGACACGCAGTTTACCTGCCCATTCTGTAACCACGAAAAGTCCTGCGATGTTAAAATGGAACGAAGTCGAAACACGGGTATAATATCTTGTACTGTGTGCTTGGAGGAGTTCCAGACTCCCATTACCTATCTCTCCGAACCCGTGGACGTCTACAGTGATTGGATCGATGCTTGCGAAGCAGCCAATCAGTAGCTCATCTCCTAGGATCAGAGGTCACCGAAGACGACACGGCCCTACAAGACTACAAggtgtatttttatatcatgaAATGTATCCTGTAACATCCCATTTGTCTCCTGATGTAAAAGGAATCATTTTCAGTCACGCATAATCACTGTGTTCCCTTTTGTTAGTATTACACAATGTgaagacacaaaggaaactggGTGAATTCGAGAGTTGGTGCATTTGATAATTCCGGTTTAGACCCACACTTTTGAGAATTTGTGAACTTTTAGTTTGTGAACTTTTTGTTGGAGTTCAggtttttatatgtttaatgtttgttgGAGTACATGtcaataaaaatgtgtgcatcTTCCTTGTTAGGAAGTTTGTGA

Function

symbol description
elof1 Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in chromatin-mediated maintenance of transcription. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Orthologous to human ELOF1 (elongation factor 1 homolog).

NR:

description
PREDICTED: transcription elongation factor 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249469 False 723 lncRNA 0.41 4 13390616 13395410
XM_026916221.2 True 770 mRNA 0.42 4 13390616 13395457

Neighbor

gene id symbol gene type direction distance location
LOC113528569 NA coding downstream 122442 13241850 ~ 13268174 (-)
nfil3-6 LOC108279453 coding downstream 163741 13223244 ~ 13226875 (-)
nfil3-2 nfil3 coding downstream 170594 13210369 ~ 13220022 (-)
gcdhb gcdh,LOC107718595,LOC107653471,LOC107563244 coding downstream 285778 13096259 ~ 13104838 (-)
ilf3b ilf3,LOC106601349 coding downstream 326633 13047319 ~ 13063983 (-)
swsap1 swsap1 coding upstream 36770 13432227 ~ 13435356 (-)
gadd45gip1 gadd45gip1 coding upstream 99529 13494986 ~ 13498163 (-)
nme4 LOC108276282 coding upstream 266706 13662163 ~ 13669491 (-)
xpo6 xpo6 coding upstream 275452 13670909 ~ 13695259 (-)
antkmt fam173a,LOC108276247 coding upstream 301156 13696613 ~ 13702527 (-)
LOC113528601 NA non-coding downstream 17678 13369454 ~ 13372938 (-)
G210570 NA non-coding downstream 36031 13310533 ~ 13354585 (-)
G210461 NA non-coding downstream 218550 13171841 ~ 13172066 (-)
G210436 NA non-coding downstream 294879 13095520 ~ 13095737 (-)
G210435 NA non-coding downstream 295139 13095244 ~ 13095477 (-)
G210607 NA non-coding upstream 9682 13405139 ~ 13405357 (-)
G210640 NA non-coding upstream 50279 13445736 ~ 13446438 (-)
LOC113528343 NA non-coding upstream 68082 13463539 ~ 13475462 (-)
G210690 NA non-coding upstream 129924 13525381 ~ 13525580 (-)
G210858 NA non-coding upstream 195982 13591439 ~ 13660814 (-)
tom1 LOC108260160 other downstream 831403 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 1051347 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 1075118 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 1689444 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 1742619 11642157 ~ 11647997 (-)
LOC117598755 NA other upstream 9 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 445709 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 598419 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 608712 14004169 ~ 14006512 (-)
pecam1 LOC108279165 other upstream 622158 14017615 ~ 14029641 (-)

Expression


Co-expression Network