G210690


Basic Information

Item Value
gene id G210690
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13525381 ~ 13525580 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249602
CAACTTTTGCTCTactaatgatataaaaataccATCAGTGGACCAAAAGGTGGTGATTATTATGAGTCCAGTGTCCTGTGAAGTAAAGATCTGTAAAGTTAATCCGTGCAGAACGAAAAGTATACACAGAGTTTGCACGGGTCACAGGACGCTTCCTTTCAAATGCTCAGGAAGCTGTAAGGGCTGTATGTGTGCACGAC

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU249602 True 200 lncRNA 0.42 1 13525381 13525580

Neighbor

gene id symbol gene type direction distance location
gadd45gip1 gadd45gip1 coding downstream 27218 13494986 ~ 13498163 (-)
swsap1 swsap1 coding downstream 90025 13432227 ~ 13435356 (-)
LOC113528569 NA coding downstream 257207 13241850 ~ 13268174 (-)
nfil3-6 LOC108279453 coding downstream 298506 13223244 ~ 13226875 (-)
nfil3-2 nfil3 coding downstream 305359 13210369 ~ 13220022 (-)
nme4 LOC108276282 coding upstream 136583 13662163 ~ 13669491 (-)
xpo6 xpo6 coding upstream 145329 13670909 ~ 13695259 (-)
antkmt fam173a,LOC108276247 coding upstream 171033 13696613 ~ 13702527 (-)
LOC113528466 LOC108276218,LOC108441001 coding upstream 188820 13714400 ~ 13715455 (-)
LOC113527894 LOC108278278,LOC108412261 coding upstream 238315 13763895 ~ 13809443 (-)
LOC113528343 NA non-coding downstream 49919 13463539 ~ 13475462 (-)
G210640 NA non-coding downstream 78943 13445736 ~ 13446438 (-)
G210607 NA non-coding downstream 120024 13405139 ~ 13405357 (-)
LOC113528601 NA non-coding downstream 152443 13369454 ~ 13372938 (-)
G210570 NA non-coding downstream 170796 13310533 ~ 13354585 (-)
G210858 NA non-coding upstream 65859 13591439 ~ 13660814 (-)
G210871 NA non-coding upstream 137836 13663416 ~ 13663797 (-)
G210886 NA non-coding upstream 197971 13723551 ~ 13726829 (-)
G210888 NA non-coding upstream 206839 13732419 ~ 13786511 (-)
LOC113527951 NA non-coding upstream 214489 13740069 ~ 13747999 (-)
LOC117598755 NA other downstream 126156 13395466 ~ 13399225 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other downstream 129924 13390616 ~ 13395457 (-)
tom1 LOC108260160 other downstream 966168 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 1186112 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 1209883 12297776 ~ 12315498 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 315586 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 468296 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 478589 14004169 ~ 14006512 (-)
pecam1 LOC108279165 other upstream 492035 14017615 ~ 14029641 (-)
G211151 usp36 other upstream 994697 14520277 ~ 14520975 (-)

Expression


Co-expression Network