LOC113528277


Basic Information

Item Value
gene id LOC113528277
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13922873 ~ 13927989 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249742
gagggaggacaaaacagacagaaagacagagagagaggcagtctCTTGTGGAGAGAACGTAAAGAAGCTGAATTCTGGCTGCGAAAGGGGGGAGAACAGGCTGAAAAATACAACCCACATGCATGTTAAGTAGTTAGTCATTCAACAGAACAGCAACAGCCGTAACTGTGTGACAGCACTTGGAGAACTGCCTGCATCGAACAAGTACAGCAAGAGAAAGCAataaactggggaaaaaaactcgGAATGAGACAAGAATAACAAGTGAAACAAGACTGGACGGCAGTCAAAAGGCAGCCTGTACGCAACTCTGTGGAGGAGTTAAACAGTCAGCCAGGCTGCTTGTGGAATTCCTAAATCAGCTACTGGAACTGAAGCACAGGAAAAAGGGGCAGCACATTTTTCCCCTCAGTGACAGCTGTGACCAGCCGAGAGAATGGatgccaaacaggaagtactTGATATCCTCCAAAAGATCTGGATCAAGCTACAGACCCTCCCTGAAGCGAACGCCATCGAGAAAGGAGGCTTCCTCATACTCCTCCTCTTCATTTTGACATTCCTGGCCTTGGTGGTGTTTGCTTGTGCACAGTGCTGCTGTAGCTGTGGACGAAACCGAAGAAGTAACAACTCTGTCCTCTGAACCGTCTCTACAGTTCAGTCAACCATGGAGAAATACCAGACAAtgaaagagggacagagaaaaGAGGGGACAAACAGAGGTCACTACAAAAGCTTTGAGGAAATGAGTTTTTGCACTAGGCCTTTTCACGCCTGCCTCCATGAcacagtaaaaagtaaaaaggaaatgaattCAGAGGAGAGAGAATGGCCTGCTCAGCCCTCTGGTGTCAACTGAAGGAACTTCAGTGTATACAGAATGCACTAAAACTGCAAATGTGGCTTTTACTCTTGTACATATATGTCATGTTTGTGAATAATCTCAAAATTGTAATCTGTACTATACCTATAAGGTATGTATGCGAGCAACGGATCAGGGAAGAAGTGTCAAAGCTATGCAAGCCAACTGGAAAGGGaaatggtggctcagtggttacgGCTGTGGGCTATAgatcggaaggttgtgagtttaaatcccagaatGACCAAGCTTTCCCTCAGTTGGATCTTGTCTCAAttgtcactttaaataaaagcaacaaccaaatgatcaaatgtaaatgaaagaaaCTTGGGAATGGTTGGGATGAACAGCAGAGCCAATGCAATTCagtatttattcaatttaaatgtggtgttttttttttttttttttggattatttgaCTGAAGTACCAAGGTAGGAGCTACAAGtaagattttgtttttacaacTAATACATAATGTGATCATTATAAGAATTCCAAACGATCACATCAAAACTTTAACTGACAATTATTACATAAATCATAACTCATCTCATAAGGAATTTTTCATACACAATGTCAAATATTTCTAAGACTTTTAGCTCATGGAATCTTAGATGTAGCACCTTTAAgcattattaatttaaacaatttataataaaacatgttcCTTTCTTTTATACAAACGTAC
>TU249743
gagggaggacaaaacagacagaaagacagagagagaggcagtctCTTGTGGAGAGAACGTAAAGAAGCTGAATTCTGGCTGCGAAAGGGGGGAGAACAGGCTGAAAAATACAACCCACATGCATGTTAAGTAGTTAGTCATTCAACAGAACAGCAACAGCCGTAACTGTGTGACAGCACTTGGAGAACTGCCTGCATCGAACAAGTACAGCAAGAGAAAGCAataaactggggaaaaaaactcgGAATGAGACAAGAATAACAAGTGAAACAAGACTGGACGGCAGTCAAAAGGCAGCCTGTACGCAACTCTGTGGAGGAGTTAAACAGTCAGCCAGGCTGCTTGTGGAATTCCTAAATCAGCTACTGGAACTGAAGCACAGGAAAAAGGGGCAGCACATTTTTCCCCTCAGTGACAGCTGTGACCAGCCGAGAGAATGGatgccaaacaggaagtactTGATATCCTCCAAAAGATCTGGATCAAGCTACAGACCCTCCCTGAAGCGAACGCCATCGAGAAAGGAGGCTTCCTCATACTCCTCCTCTTCATTTTGACATTCCTGGCCTTGGTGGTGTTTGCTTGTGCACAGTGCTGCTGTAGCTGTGGACGAAACCGAAGAAGTAACAACTCTGTCCTCTGAACCGTCTCTACAGTTCAGTCAACCATGGAGAAATACCAGACAAtgaaagagggacagagaaaaGAGGGGACAAACAGAGGTCACTACAAAAGCTTTGAGGAAATGAGTTTTTGCACTAGGCCTTTTCACGCCTGCCTCCATGAcacagtaaaaagtaaaaaggaaatgaattCAGAGGAGAGAGAATGGCCTGCTCAGCCCTCTGGTGTCAACTGAAGGAACTTCAGTGTATACAGAATGCACTAAAACTGCAAATGTGGCTTTTACTCTTGTACATATATGTCATGTTTGTGAATAATCTCAAAATTGTAATCTGTACTATACCTATAAGGTATGTATGCGAGCAACGGATCAGGGAAGAAGTGTCAAAGCTATGCAAGCCAACTGGAAAGGGaaatggtggctcagtggttacgGCTGTGGGCTATAgatcggaaggttgtgagtttaaatcccagaatGACCAAGCTTTCCCTCAGTTGGATCTTGTCTCAAttgtcactttaaataaaagcaacaaccaaatgatcaaatgtaaatgaaagaaaCTTGGGAATGGTTGGGATGAACAGCAGAGCCAATGCAATTCagtatttattcaatttaaatgtggtgttttttttttttttttttggattatttgaCTGAAGTACCAAGGTAGGAGCTACAAGtaagattttgtttttacaacTAATACATAATGTGATCATTATAAGAATTCCAAACGATCACATCAAAACTTTAACTGACAATTATTACATAAATCATAACTCATCTCATAAGGAATTTTTCATACACAATGTCAAATATTTCTAAGACTTTTAGCTCATGGAATCTTAGATGTAGCACCTTTAAgcattattaatttaaacaatttataataaaacatgttcCTTTCTTTTATACAAACGTACCTAAAACCTATAATACATTgaataaatacaaatctatTAACTGTTAAGTTTAAAGTGTGTGCACTGTATGAAATCTTACCCCTCTTGTTCACAGAAAGCAACCATGGCCTCAAAGTCCAGCAGAGGTGCTTTGTCCTGTTCTTTCTCCGAACCTCGTTTCTCCTGAAAGAAAGGACTGttatgaaacatttcaaaaacacacaataacacaagtGA
>TU249744
gagggaggacaaaacagacagaaagacagagagagaggcagtctCTTGTGGAGAGAACGTAAAGAAGCTGAATTCTGGCTGCGAAAGGGGGGAGAACAGGCTGAAAAATACAACCCACATGCATGTTAAGTAGTTAGTCATTCAACAGAACAGCAACAGCCGTAACTGTGTGACAGCACTTGGAGAACTGCCTGCATCGAACAAGTACAGCAAGAGAAAGCAataaactggggaaaaaaactcgGAATGAGACAAGAATAACAAGTGAAACAAGACTGGACGGCAGTCAAAAGGCAGCCTGTACGCAACTCTGTGGAGGAGTTAAACAGTCAGCCAGGCTGCTTGTGGAATTCCTAAATCAGCTACTGGAACTGAAGCACAGGAAAAAGGGGCAGCACATTTTTCCCCTCAGTGACAGCTGTGACCAGCCGAGAGAATGGatgccaaacaggaagtactTGATATCCTCCAAAAGATCTGGATCAAGCTACAGACCCTCCCTGAAGCGAACGCCATCGAGAAAGGAGGCTTCCTCATACTCCTCCTCTTCATTTTGACATTCCTGGCCTTGGTGGTGTTTGCTTGTGCACAGTGCTGCTGTAGCTGTGGACGAAACCGAAGAAGTAACAACTCTGTCCTCTGAACCGTCTCTACAGTTCAGTCAACCATGGAGAAATACCAGACAAtgaaagagggacagagaaaaGAGGGGACAAACAGAGGTCACTACAAAAGCTTTGAGGAAATGAGTTTTTGCACTAGGCCTTTTCACGCCTGCCTCCATGAcacagtaaaaagtaaaaaggaaatgaattCAGAGGAGAGAGAATGGCCTGCTCAGCCCTCTGGTGTCAACTGAAGGAACTTCAGTGTATACAGAATGCACTAAAACTGCAAATGTGGCTTTTACTCTTGTACATATATGTCATGTTTGTGAATAATCTCAAAATTGTAATCTGTACTATACCTATAAGGTATGTATGCGAGCAACGGATCAGGGAAGAAGTGTCAAAGCTATGCAAGCCAACTGGAAAGGGaaatggtggctcagtggttacgGCTGTGGGCTATAgatcggaaggttgtgagtttaaatcccagaatGACCAAGCTTTCCCTCAGTTGGATCTTGTCTCAAttgtcactttaaataaaagcaacaaccaaatgatcaaatgtaaatgaaagaaaCTTGGGAATGGTTGGGATGAACAGCAGAGCCAATGCAATTCagtatttattcaatttaaatgtggtgttttttttttttttttttggattatttgaCTGAAGTACCAAGGTAGGAGCTACAAGtaagattttgtttttacaacTAATACATAATGTGATCATTATAAGAATTCCAAACGATCACATCAAAACTTTAACTGACAATTATTACATAAATCATAACTCATCTCATAAGGAATTTTTCATACACAATGTCAAATATTTCTAAGACTTTTAGCTCATGGAATCTTAGATGTAGCACCTTTAAgcattattaatttaaacaatttataataaaacatgttcCTTTCTTTTATACAAACGTACCTAAAACCTATAATACATTgaataaatacaaatctatTAACTGTTAAGTTTAAA
>TU249745
CAAAAGGGGGTGTGTGGGGGTGAGAAgtaaatagagaaagagagggaggacaaaacagacagaaagacagagagagaggcagtctCTTGTGGAGAGAACGTAAAGAAGCTGAATTCTGGCTGCGAAAGGGGGGAGAACAGGCTGAAAAATACAACCCACATGCATGTTAAGTAGTTAGTCATTCAACAGAACAGCAACAGCCGTAACTGTGTGACAGCACTTGGAGAACTGCCTGCATCGAACAAGTACAGCAAGAGAAAGCAataaactggggaaaaaaactcgGAATGAGACAAGAATAACAAGTGAAACAAGACTGGACGGCAGTCAAAAGGCAGCCTGTACGCAACTCTGTGGAGGAGTTAAACAGTCAGCCAGGCTGCTTGTGGAATTCCTAAATCAGCTACTGGAACTGAAGCACAGGAAAAAGGGGCAGCACATTTTTCCCCTCAGTGACAGCTGTGACCAGCCGAGAGAATGGatgccaaacaggaagtactTGATATCCTCCAAAAGATCTGGATCAAGCTACAGACCCTCCCTGAAGCGAACGCCATCGAGAAAGGAGGCTTCCTCATACTCCTCCTCTTCATTTTGACATTCCTGGCCTTGGTGGTGTTTGCTTGTGCACAGTGCTGCTGTAGCTGTGGACGAAACCGAAGAAGTAACAACTCTGTCCTCTGAACCGTCTCTACAGTTCAGTCAACCATGGAGAAATACCAGACAAtgaaagagggacagagaaaaGAGGGGACAAACAGAGGTCACTACAAAAGCTTTGAGGAAATGAGTTTTTGCACTAGGCCTTTTCACGCCTGCCTCCATGAcacagtaaaaagtaaaaaggaaatgaattCAGAGGAGAGAGAATGGCCTGCTCAGCCCTCTGGTGTCAACTGAAGGAACTTCAGTGTATACAGAATGCACTAAAACTGCAAATGTGGCTTTTACTCTTGTACATATATGTCATGTTTGTGAATAATCTCAAAATTGTAATCTGTACTATACCTATAAGGTATGTATGCGAGCAACGGATCAGGGAAGAAGTGTCAAAGCTATGCAAGCCAACTGGAAAGGGaaatggtggctcagtggttacgGCTGTGGGCTATAgatcggaaggttgtgagtttaaatcccagaatGACCAAGCTTTCCCTCAGTTGGATCTTGTCTCAAttgtcactttaaataaaagcaacaaccaaatgatcaaatgtaaatgaaagaaaCTTGGGAATGGTTGGGATGAACAGCAGAGCCAATGCAATTCagtatttattcaatttaaatgtggtgttttttttttttttttttggattatttgaCTGAAGTACCAAGGTAGGAGCTACAAGtaagattttgtttttacaacTAATACATAATGTGATCATTATAAGAATTCCAAACGATCACATCAAAACTTTAACTGACAATTATTACATAAATCATAACTCATCTCATAAGGAATTTTTCATACACAATGTCAAATATTTCTAAGACTTTTAGCTCATGGAATCTTAGATGTAGCACCTTTAAgcattattaatttaaacaatttataataaaacatgttcCTTTCTTTTATACAAACGTAC
>XR_003402923.2
tagagaaagagagggaggacaaaacagacagaaagacagagagagaggcagtctCTTGTGGAGAGAACGTAAAGAAGCTGAATTCTGGCTGCGAAAGGGGGGAGAACAGGCTGAAAAATACAACCCACATGCATGTTAAGTAGTTAGTCATTCAACAGAACAGCAACAGCCGTAACTGTGTGACAGCACTTGGAGAACTGCCTGCATCGAACAAGTACAGCAAGAGAAAGCAataaactggggaaaaaaactcgGAATGAGACAAGAATAACAAGTGAAACAAGACTGGACGGCAGTCAAAAGGCAGCCTGTACGCAACTCTGTGGAGGAGTTAAACAGTCAGCCAGGCTGCTTGTGGAATTCCTAAATCAGCTACTGGAACTGAAGCACAGGAAAAAGGGGCAGCACATTTTTCCCCTCAGTGACAGCTGTGACCAGCCGAGAGAATGGatgccaaacaggaagtactTGATATCCTCCAAAAGATCTGGATCAAGCTACAGACCCTCCCTGAAGCGAACGCCATCGAGAAAGGAGGCTTCCTCATACTCCTCCTCTTCATTTTGACATTCCTGGCCTTGGTGGTGTTTGCTTGTGCACAGTGCTGCTGTAGCTGTGGACGAAACCGAAGAAGTAACAACTCTGTCCTCTGAACCGTCTCTACAGTTCAGTCAACCATGGAGAAATACCAGACAAtgaaagagggacagagaaaaGAGGGGACAAACAGAGGTCACTACAAAAGCTTTGAGGAAATGAGTTTTTGCACTAGGCCTTTTCACGCCTGCCTCCATGAcacagtaaaaagtaaaaaggaaatgaattCAGAGGAGAGAGAATGGCCTGCTCAGCCCTCTGGTGTCAACTGAAGGAACTTCAGTGTATACAGAATGCACTAAAACTGCAAATGTGGCTTTTACTCTTGTACATATATGTCATGTTTGTGAATAATCTCAAAATTGTAATCTGTACTATACCTATAAGGTATGTATGCGAGCAACGGATCAGGGAAGAAGTGTCAAAGCTATGCAAGCCAACTGGAAAGGGaaatggtggctcagtggttacgGCTGTGGGCTATAgatcggaaggttgtgagtttaaatcccagaatGACCAAGCTTTCCCTCAGTTGGATCTTGTCTCAAttgtcactttaaataaaagcaacaaccaaatgatcaaatgtaaatgaaagaaaCTTGGGAATGGTTGGGATGAACAGCAGAGCCAATGCAATTCagtatttattcaatttaaatgtggtgttttttttttttttttttggattatttgaCTGAAGTACCAAGGTAGGAGCTACAAGtaagattttgtttttacaacTAATACATAATGTGATCATTATAAGAATTCCAAACGATCACATCAAAACTTTAACTGACAATTATTACATAAATCATAACTCATCTCATAAGGAATTTTTCATACACAATGTCAAATATTTCTAAGACTTTTAGCTCATGGAATCTTAGATGTAGCACCTTTAAgcattattaatttaaacaatttataataaaacatgttcCTTTCTTTTATACAAACGTACCTAAAACCTATAATACATTgaataaatacaaatctatTAACTGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249742 False 1557 lncRNA 0.41 3 13922914 13927773
TU249743 True 1773 lncRNA 0.40 3 13922914 13927989
TU249744 False 1611 lncRNA 0.40 3 13922914 13927827
TU249745 False 1598 lncRNA 0.41 3 13922873 13927773
XR_003402923.2 False 1614 lncRNA 0.40 3 13922904 13927820

Neighbor

gene id symbol gene type direction distance location
si:ch211-120g10.1 si:ch211-120g10.1,si:ch73-364h19.2,LOC108279991,LOC108435881,LOC107558873,LOC107548722,LOC107748865,LOC107665693,LOC107654584 coding upstream 19762 13893471 ~ 13903111 (+)
si:ch73-364h19.1 LOC108258115 coding upstream 33546 13877160 ~ 13889327 (+)
dhps dhps,LOC107563249,LOC107661880 coding upstream 188657 13721234 ~ 13734216 (+)
fbxw9 fbxw9 coding upstream 208989 13702684 ~ 13713884 (+)
nfixb nfix,nfixb,LOC107553634,LOC107661654,LOC107715650,LOC106601192,LOC107718575 coding upstream 262634 13517596 ~ 13660239 (+)
cdr2l cdr2l,LOC107743016,LOC107665638 coding downstream 17376 13945365 ~ 13960351 (+)
nptx1l nptx1l,LOC108274797,LOC108435874,LOC107569544,LOC107665615,LOC107684232 coding downstream 189964 14117953 ~ 14122314 (+)
LOC113528345 mgat5b,LOC108274344,LOC108435872,LOC107743022,LOC107562046 coding downstream 301833 14229822 ~ 14311551 (+)
rasd4 zgc:153845,LOC108435855,LOC103035404,LOC106601411,LOC106606999 coding downstream 447106 14375095 ~ 14376449 (+)
LOC113527900 LOC108275579 coding downstream 504735 14432724 ~ 14442332 (+)
G210792 NA non-coding upstream 51781 13870370 ~ 13871092 (+)
G210789 xylt2 non-coding upstream 59994 13862372 ~ 13862879 (+)
G210782 NA non-coding upstream 61643 13861008 ~ 13861230 (+)
G210779 xylt2,LOC107665700,LOC107548721 non-coding upstream 67078 13855143 ~ 13855795 (+)
G210778 NA non-coding upstream 68616 13852844 ~ 13854257 (+)
G210784 NA non-coding downstream 59886 13987875 ~ 13989893 (+)
G211006 NA non-coding downstream 450554 14378543 ~ 14379897 (+)
G211031 NA non-coding downstream 504381 14432370 ~ 14433295 (+)
G211032 NA non-coding downstream 505838 14433827 ~ 14434055 (+)
G211058 NA non-coding downstream 538449 14466438 ~ 14466674 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 428931 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 477187 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 1548501 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 1732803 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 1782502 12135269 ~ 12140371 (+)
socs3a socs3 other downstream 691215 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 1060097 14988086 ~ 14991450 (+)
G211913 NA other downstream 1990228 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 2212341 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 3159295 17087284 ~ 17113156 (+)

Expression


Co-expression Network