G210888


Basic Information

Item Value
gene id G210888
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13732419 ~ 13786511 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249837
CATACTTCTCCCTACCTCGTCTTCTCTATGAGGTTCATTAGTGGTAAATACTGCCCAGGTTGCCATTGCTGTCAGCAGAAATGGAGTTGGTCTGCTATATGCACAGTTTTGACCCTGCTTTCCTGATTTTGAAAACATTGTTATATGTGCAAGTTATTTAAACTGAAAAGTTAAAAAGCACCTATTGAAAGCAGTTTTTTATGTTAGttaatgtgtgtagtgcagcagttTGCAGGATTTGGAAATGAGATATCTAGGTATGACAAGCCACCAACAAATGAACCTCTCTTTGGTTGTTGgtgaggaaaaaagaacaatgGTGACTGCTATATCAGCATTCTAAACTATTCTGAAACTATTTCTCCATCAGAAACTATTTCTCCATCAGGCAactacaaataataaaaccaaCAGCCCAGACACGTAGCCTCTTCCCAGGCATCCTGGTTTTGATTTGTCCACTCATAGTACACAACTtttggtattcagaggaaacatcACATGAACCTAGTAGAGCATTATGGTCTTGAAACACttaaccttgtgtgtgtgtgtaatagtttgccccacatcCTTCTTATTACACCACTGATGAGACCTGGTAATAAAATGAACTGCGCATTCCTAACAGTTTCATTGTTGAGCTACTGACAGATTTTAGCCCTTCCATGTAATATCACTAAATAATACCATAATTAGCATGACAGCACAACTTGGTTGGAACCACACACCTGACGGCAGATGTTTCACACATGTTTAAAGGAAAATGCAAATCTTAATCCCTATTTGGATATATTCATTTCTCACTCCaatgtttgtaataaaatgaaatctgtAATGTCTCCTCCATGATAAAGCTCTCGCATTCCAGGGGCTTGAAAgatttcagctgtttttttttttctttctatgaaCCCAGATGATTATATCATAAAAGAGGCCATAATCACATGATGATATATGATGTCATGCAAATGTAAAACAATACTACATATTCACAATCTTcaacaaaaatttaaaattcacatAAAACAGGTCAATAGCTGAAACAATATAGCATCAGTCTGACCCATTCAAAATGTCTTTAGTTTtctttgatcattttttctattattatagTGCGACAGTCTATCATAAGCCAGACTAATAAACACTTGCATGCtgttgcagcaaaaaaaaaaaaaaaatgCTTCTTTCAAAGTctttaataaaagcatttattttatatataacgtGTCTTTCGGTGTACAAACTAAATTTCTCTTAGCCtaaacaaagaagaaaacatgaaGTAACAAGTAAAAAGGGGAACAAACGATAGTTACccaaaagtataaataaaacctCAATAAGAAGGCAAATTAAATAGGCATAAAATAATTGGGCAGCTGTGAACAAGTAGGTGGAATCAGgacaaacagacacagacataacaaacaaaaaaagtaaatacaaaaTAGGAGGTGAAGGAAAGacgtgaaaaagaaagagaaaccaCAGGAGAAATGAGCAGGCAGTGTTAATCACTCTTTCTATCTGCTGTCAGTTTGCTGGCTTGATGTGCAAATGTCTCAGCCACCAGCAGGGGGAAGACTATAGAGGCATCTGCATAGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249837 True 1616 lncRNA 0.36 3 13732419 13786511

Neighbor

gene id symbol gene type direction distance location
LOC113528466 LOC108276218,LOC108441001 coding downstream 16964 13714400 ~ 13715455 (-)
antkmt fam173a,LOC108276247 coding downstream 29892 13696613 ~ 13702527 (-)
xpo6 xpo6 coding downstream 37160 13670909 ~ 13695259 (-)
nme4 LOC108276282 coding downstream 62928 13662163 ~ 13669491 (-)
gadd45gip1 gadd45gip1 coding downstream 234256 13494986 ~ 13498163 (-)
zgc:112183 rab37,zgc:112183,LOC108278300,LOC107665712,LOC107654586,LOC106606976,LOC105012908 coding upstream 29215 13815726 ~ 13833885 (-)
recql5 recql5 coding upstream 117647 13904158 ~ 13938439 (-)
arhgdia arhgdia,LOC107654583,LOC107665665 coding upstream 173990 13960501 ~ 13985023 (-)
alyref alyref coding upstream 200211 13986722 ~ 13989892 (-)
LOC113528592 LOC108256535,LOC108435873 coding upstream 397026 14183537 ~ 14202558 (-)
G210886 NA non-coding downstream 5590 13723551 ~ 13726829 (-)
G210871 NA non-coding downstream 68622 13663416 ~ 13663797 (-)
G210858 NA non-coding downstream 71605 13591439 ~ 13660814 (-)
G210690 NA non-coding downstream 206839 13525381 ~ 13525580 (-)
LOC113528343 NA non-coding downstream 256957 13463539 ~ 13475462 (-)
G210915 NA non-coding upstream 82688 13869199 ~ 13869573 (-)
G210952 NA non-coding upstream 348583 14135094 ~ 14135304 (-)
G210973 NA non-coding upstream 430162 14216673 ~ 14216872 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding upstream 507796 14294307 ~ 14298198 (-)
G211003 NA non-coding upstream 543075 14329586 ~ 14329920 (-)
LOC117598755 NA other downstream 333194 13395466 ~ 13399225 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other downstream 336962 13390616 ~ 13395457 (-)
tom1 LOC108260160 other downstream 1173206 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 1393150 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 1416921 12297776 ~ 12315498 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 54655 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 207365 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 217658 14004169 ~ 14006512 (-)
pecam1 LOC108279165 other upstream 231104 14017615 ~ 14029641 (-)
G211151 usp36 other upstream 733766 14520277 ~ 14520975 (-)

Expression


Co-expression Network