mcrip1 (mcrip1,fam195b,LOC107654575)


Basic Information

Item Value
gene id mcrip1
gene name mcrip1,fam195b,LOC107654575
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13993876 ~ 14001037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249888
TTTGTTTTGCCGACCCGGAGCTACTTGGGCTGTATTAGCAGCACTGCGGCTGACGATAGCCTGTGTTTCtcatattccaaaaaaaaaaacaaaaacaaacaaaaaaagagtgGAAAGAAAGGAGCGTACAGGTATTGAGCTCCACAGAGGAATTCTCTGAAAGTTATCATCCAGGACCGAGACGGGGAGACATAAGCCTATTTATTACACAATGACCAGCTCCTCTACTCCCAGAATGCACACATACAAAAGGACCTCTAGTCCTCGGTCTCCGACTAATACCGGGGAGCTCTACACCCCTGCACATGAAGAAAATGTGCGCTTTATTCATGACACATGGCTGTGTGTTCTAAGAGATATTAAATCACCGCAAAACAGTGAACGAGGACCACAAGAATATGTGGAGAAAAACCCAAACCCAAACTTGCTTTCCTTCACCCCAGTGGACCTGAGTGAACTCAGGAGGCCAAGCACACAGGACTGCAAGAAGTCTTAGTGAATTTCCTCTCTCATCTTGGTCCAGCAGCTTTTTTCTCCCCACTCATTCTCTTTGGGACCTTTTTTATGCCAGCATCCTTCTGTCAGCCACATTAGTCCAGAAAGCCTCTTCCTTCTCTGCCTCATCGAACTCTGGTCTGGACAAACTGGCTGATGTATGTTCAAGACCCGTCGTATCCCTGATTCTCATGCCGAATCTGTGCACCTCGTATTAACAGATTTCAGGGAATTTGTTGtcactttgtttttcttttcattttgtattctGGATTCTTTTTTCATATGCATTGTTTATTATAAAGATCATAACCCAACAGAAGGAAATGGCAGGAAGAAGTTGGCATGCAGTGACTGAGGGAAGGACTCGCACTCTgaaaaacatgatgtgctacaaCTTTCAAAACATGGCACTTTCTAGGAAAGTGCCGAAaggctgttttttgttttttggtttttttttaggttagTTTGATAGAATAAGATATTGGAATAGTAAAGGCAGGCCAAATATTTTTAACAGAGATAcca
>XM_026915988.2
TACTGCGCATGCGCCAATGTGCCGCTTTTGTTTTGCCGACCCGGAGCTACTTGGGCTGTATTAGCAGCACTGCGGCTGACGATAGCCTGTGTTTCtcatattccaaaaaaaaaaacaaaaacaaacaaaaaaagagtgGAAAGAAAGGAGCGTACAGGTATTGAGCTCCACAGAGGAATTCTCTGAAAGTTATCATCCAGGACCGAGACGGGGAGACATAAGCCTATTTATTACACAATGACCAGCTCCTCTACTCCCAGAATGCACACATACAAAAGGACCTCTAGTCCTCGGTCTCCGACTAATACCGGGGAGCTCTACACCCCTGCACATGAAGAAAATGTGCGCTTTATTCATGACACATGGCTGTGTGTTCTAAGAGATATTAAATCACCGCAAAACAGTGAACGAGGACCACAAGAATATGTGGAGAAAAACCCAAACCCAAACTTGCTTTCCTTCACCCCAGTGGACCTGAGTGAACTCAGGAGGCCAAGCACACAGGACTGCAAGAAGTCTTAGTGAATTTCCTCTCTCATCTTGGTCCAGCAGCTTTTTTCTCCCCACTCATTCTCTTTGGGACCTTTTTTATGCCAGCATCCTTCTGTCAGCCACATTAGTCCAGAAAGCCTCTTCCTTCTCTGCCTCATCGAACTCTGGTCTGGACAAACTGGCTGATGTATGTTCAAGACCCGTCGTATCCCTGATTCTCATGCCGAATCTGTGCACCTCGTATTAACAGATTTCAGGGAATTTGTTGtcactttgtttttcttttcattttgtattctGGATTCTTTTTTCATATGCATTGTTTATTATAAAGATCATAACCCAACAGAAGGAAATGGCAGGAAGAAGTTGGCATGCAGTGACTGAGGGAAGGACTCGCACTCTgaaaaacatgatgtgctacaaCTTTCAAAACATGGCACTTTCTAGGAAAGTGCCGAAaggctgttttttgttttttggtttttttttaggttagTTTGATAGAATAAGATATTGGAATAGTAAAGGCAGGCCAAATATTTTTAACAGAGATAccacattcttcttctttttttaaaaaaaaagaaatactttcAAAAGAatgtaattacatttttctgtgtCTTTTAAGCcttgaaattgaaataaaattgtcTTTTATGGTATCTCAACCTACA
>XM_034310273.1
GTGTACTGCGCATGCGCCAATGTGCCGCTTTTGTTTTGCCGACCCGGAGCTACTTGGGCTGTATTAGCAGCACTGCGGCTGACGATAGCCTGTGTTTCtcatattccaaaaaaaaaaacaaaaacaaacaaaaaaagagtgGAAAGAAAGGTATTGAGCTCCACAGAGGAATTCTCTGAAAGTTATCATCCAGGACCGAGACGGGGAGACATAAGCCTATTTATTACACAATGACCAGCTCCTCTACTCCCAGAATGCACACATACAAAAGGACCTCTAGTCCTCGGTCTCCGACTAATACCGGGGAGCTCTACACCCCTGCACATGAAGAAAATGTGCGCTTTATTCATGACACATGGCTGTGTGTTCTAAGAGATATTAAATCACCGCAAAACAGTGAACGAGGACCACAAGAATATGTGGAGAAAAACCCAAACCCAAACTTGCTTTCCTTCACCCCAGTGGACCTGAGTGAACTCAGGAGGCCAAGCACACAGGACTGCAAGAAGTCTTAGTGAATTTCCTCTCTCATCTTGGTCCAGCAGCTTTTTTCTCCCCACTCATTCTCTTTGGGACCTTTTTTATGCCAGCATCCTTCTGTCAGCCACATTAGTCCAGAAAGCCTCTTCCTTCTCTGCCTCATCGAACTCTGGTCTGGACAAACTGGCTGATGTATGTTCAAGACCCGTCGTATCCCTGATTCTCATGCCGAATCTGTGCACCTCGTATTAACAGATTTCAGGGAATTTGTTGtcactttgtttttcttttcattttgtattctGGATTCTTTTTTCATATGCATTGTTTATTATAAAGATCATAACCCAACAGAAGGAAATGGCAGGAAGAAGTTGGCATGCAGTGACTGAGGGAAGGACTCGCACTCTgaaaaacatgatgtgctacaaCTTTCAAAACATGGCACTTTCTAGGAAAGTGCCGAAaggctgttttttgttttttggtttttttttaggttagTTTGATAGAATAAGATATTGGAATAGTAAAGGCAGGCCAAATATTTTTAACAGAGATAccacattcttcttctttttttaaaaaaaaagaaatactttcAAAAGAatgtaattacatttttctgtgtCTTTTAAGCcttgaaattgaaataaaattgtcTTTTATGGTATCTCAACCTACA

Function

symbol description
mcrip1 Predicted to be involved in regulation of epithelial to mesenchymal transition. Predicted to be located in cytoplasmic stress granule and nucleus. Orthologous to human MCRIP1 (MAPK regulated corepressor interacting protein 1).

NR:

description
mapk-regulated corepressor-interacting protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249888 False 1026 lncRNA 0.42 5 13993996 14001008
XM_026915988.2 True 1172 mRNA 0.41 5 13993876 14001034
XM_034310273.1 False 1165 mRNA 0.41 5 13993876 14001037

Neighbor

gene id symbol gene type direction distance location
alyref alyref coding downstream 3984 13986722 ~ 13989892 (-)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 8853 13960501 ~ 13985023 (-)
recql5 recql5 coding downstream 55437 13904158 ~ 13938439 (-)
zgc:112183 rab37,zgc:112183,LOC108278300,LOC107665712,LOC107654586,LOC106606976,LOC105012908 coding downstream 159991 13815726 ~ 13833885 (-)
LOC113527894 LOC108278278,LOC108412261 coding downstream 184433 13763895 ~ 13809443 (-)
LOC113528592 LOC108256535,LOC108435873 coding upstream 182500 14183537 ~ 14202558 (-)
prpsap1 LOC105013149,LOC108255900,LOC106606986,LOC103375364,LOC101163819,LOC100700674,LOC108435871,LOC107731682 coding upstream 377998 14379035 ~ 14391094 (-)
LOC113527937 LOC108255917 coding upstream 393192 14394229 ~ 14410677 (-)
LOC113528545 LOC108255936,LOC103153053 coding upstream 413876 14414913 ~ 14432720 (-)
si:dkey-282h22.5 LOC108261121 coding upstream 446203 14447240 ~ 14451595 (-)
G210915 NA non-coding downstream 124303 13869199 ~ 13869573 (-)
G210877 NA non-coding downstream 169583 13758526 ~ 13824293 (-)
G210888 NA non-coding downstream 207365 13732419 ~ 13786511 (-)
LOC113527951 NA non-coding downstream 245877 13740069 ~ 13747999 (-)
G210886 NA non-coding downstream 267047 13723551 ~ 13726829 (-)
G210952 NA non-coding upstream 134057 14135094 ~ 14135304 (-)
G210973 NA non-coding upstream 215636 14216673 ~ 14216872 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding upstream 293270 14294307 ~ 14298198 (-)
G211003 NA non-coding upstream 328549 14329586 ~ 14329920 (-)
G211054 LOC108275544 non-coding upstream 460755 14461792 ~ 14462409 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other downstream 122745 13841166 ~ 13871131 (-)
LOC117598755 NA other downstream 594651 13395466 ~ 13399225 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other downstream 598419 13390616 ~ 13395457 (-)
tom1 LOC108260160 other downstream 1434663 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 1654607 12333854 ~ 12339269 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 3132 14004169 ~ 14006512 (-)
pecam1 LOC108279165 other upstream 16578 14017615 ~ 14029641 (-)
G211151 usp36 other upstream 519240 14520277 ~ 14520975 (-)
LOC113528445 LOC108274755 other upstream 677713 14678750 ~ 14690132 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 977582 14978619 ~ 14986112 (-)

Expression


Co-expression Network