G210997 (mgat5b,LOC108274344,LOC108435872)


Basic Information

Item Value
gene id G210997
gene name mgat5b,LOC108274344,LOC108435872
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14294307 ~ 14298198 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249956
CCTTCCTAAGAAGCTGCTGAAGCTCATGTTGAGGCAACAAGCCATGGTTTCTTACAAAGGCAGGGATTTCTGGAGGCCGCTGGGATTCATAATAGACTGTTCCATGAATGTCCATGTAGCGGTGCAGAATGGTTAGAAACTTGTCTTTCCCCTGCAGctTCCACATGCTGGCCTCTTTGCCATAGATCACTGCCATATtgttcactttctctctttgaaTGTTGAGCCTTTCAGTGTGGTTTAGTTCTTCAGCAACAAAGCCCATGAAGGAGTTGTCAGGA

Function

symbol description
mgat5b Enables alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity and manganese ion binding activity. Involved in protein O-linked glycosylation via serine. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249956 True 281 lncRNA 0.46 2 14294307 14298198

Neighbor

gene id symbol gene type direction distance location
LOC113528592 LOC108256535,LOC108435873 coding downstream 91749 14183537 ~ 14202558 (-)
alyref alyref coding downstream 304415 13986722 ~ 13989892 (-)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 309284 13960501 ~ 13985023 (-)
recql5 recql5 coding downstream 355868 13904158 ~ 13938439 (-)
zgc:112183 rab37,zgc:112183,LOC108278300,LOC107665712,LOC107654586,LOC106606976,LOC105012908 coding downstream 460422 13815726 ~ 13833885 (-)
prpsap1 LOC105013149,LOC108255900,LOC106606986,LOC103375364,LOC101163819,LOC100700674,LOC108435871,LOC107731682 coding upstream 80837 14379035 ~ 14391094 (-)
LOC113527937 LOC108255917 coding upstream 96031 14394229 ~ 14410677 (-)
LOC113528545 LOC108255936,LOC103153053 coding upstream 116715 14414913 ~ 14432720 (-)
si:dkey-282h22.5 LOC108261121 coding upstream 149042 14447240 ~ 14451595 (-)
LOC113528481 zgc:112320,LOC108275843,LOC101168622 coding upstream 165207 14463405 ~ 14465291 (-)
G210973 NA non-coding downstream 77435 14216673 ~ 14216872 (-)
G210952 NA non-coding downstream 159003 14135094 ~ 14135304 (-)
G210915 NA non-coding downstream 424734 13869199 ~ 13869573 (-)
G210877 NA non-coding downstream 470014 13758526 ~ 13824293 (-)
G210888 NA non-coding downstream 507796 13732419 ~ 13786511 (-)
G211003 NA non-coding upstream 31388 14329586 ~ 14329920 (-)
G211054 LOC108275544 non-coding upstream 163594 14461792 ~ 14462409 (-)
G211187 NA non-coding upstream 290622 14588820 ~ 14594664 (-)
G211195 socs3 non-coding upstream 321034 14619232 ~ 14621782 (-)
G211269 NA non-coding upstream 529037 14827235 ~ 14844312 (-)
pecam1 LOC108279165 other downstream 264666 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 287795 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 293270 13993876 ~ 14001037 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other downstream 423176 13841166 ~ 13871131 (-)
LOC117598755 NA other downstream 895082 13395466 ~ 13399225 (-)
G211151 usp36 other upstream 222079 14520277 ~ 14520975 (-)
LOC113528445 LOC108274755 other upstream 380552 14678750 ~ 14690132 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 680421 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1852877 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 2274347 16572545 ~ 16598688 (-)

Expression


Co-expression Network