G211031


Basic Information

Item Value
gene id G211031
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14432370 ~ 14433295 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU249993
GACACACCCGTGTTAGGTTCAGTTACCGTGTGGTAATCAACTACCTAGCGAAGAAGCTAACGGTTTAATTATCGATGACTATCTAGATAATAGCAACACGAGAGCAAATTATGAACCGACGGTATTAAATGCAAGGTACAGACATTAAATATTGAAGGAAAACATATTACCTTGCCTATTTTCGCTCAGCTGTTTCTCGAACTCTTCGAAATCGGACATGTTTGGCGGCGGCACCGGAAGCGTTCAGTATAAATAAAGCTGCGGTTGTTAGGAGAAGGTAAAATAGGATGTGATCAAGTACTCCTCGGTGCATCCTGGGACTTTGATGGGGGTTACACATGAGGACGAGTAGCAtgtattatccatccatccgtccattgTCTGTACCGCTTATTCTACACAGACTCGCAGGCAGCCTGGAGCCTATcgtcccaggggactcaggacACAAGGCAAAGTGCCAGAGCAcgatcgcacacacactcactacgtgcaatttggaaatgccagtcagcctacagtgcatgtctttggactggggcaGGAAACCAGAGTATGTGGAGGAAACcactgaagcacagggagaacatgcaaactccacgcatgCAGGa

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU249993 True 611 lncRNA 0.47 2 14432370 14433295

Neighbor

gene id symbol gene type direction distance location
rasd4 zgc:153845,LOC108435855,LOC103035404,LOC106601411,LOC106606999 coding upstream 55921 14375095 ~ 14376449 (+)
LOC113528345 mgat5b,LOC108274344,LOC108435872,LOC107743022,LOC107562046 coding upstream 120819 14229822 ~ 14311551 (+)
nptx1l nptx1l,LOC108274797,LOC108435874,LOC107569544,LOC107665615,LOC107684232 coding upstream 310056 14117953 ~ 14122314 (+)
cdr2l cdr2l,LOC107743016,LOC107665638 coding upstream 472019 13945365 ~ 13960351 (+)
si:ch211-120g10.1 si:ch211-120g10.1,si:ch73-364h19.2,LOC108279991,LOC108435881,LOC107558873,LOC107548722,LOC107748865,LOC107665693,LOC107654584 coding upstream 529259 13893471 ~ 13903111 (+)
im:6904045 NA coding downstream 10339 14443634 ~ 14447163 (+)
LOC113528183 LOC108275544 coding downstream 28061 14461356 ~ 14463482 (+)
LOC113527904 lgals3bp coding downstream 42951 14476246 ~ 14478966 (+)
timp2b LOC108277022 coding downstream 58093 14491388 ~ 14499569 (+)
usp36 usp36,LOC107717487,LOC104948677 coding downstream 68013 14501308 ~ 14527529 (+)
G211006 NA non-coding upstream 52473 14378543 ~ 14379897 (+)
G210784 NA non-coding upstream 442477 13987875 ~ 13989893 (+)
G210788 NA non-coding upstream 469984 13909109 ~ 13962386 (+)
LOC113528277 NA non-coding upstream 504381 13922873 ~ 13927989 (+)
G210792 NA non-coding upstream 561278 13870370 ~ 13871092 (+)
G211032 NA non-coding downstream 532 14433827 ~ 14434055 (+)
G211058 NA non-coding downstream 33143 14466438 ~ 14466674 (+)
G211076 NA non-coding downstream 48518 14481813 ~ 14482016 (+)
G211101 NA non-coding downstream 129225 14562520 ~ 14563021 (+)
G211117 NA non-coding downstream 171422 14604717 ~ 14692759 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 938428 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 986684 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2057998 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 2242300 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 2291999 12135269 ~ 12140371 (+)
socs3a socs3 other downstream 185909 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 554791 14988086 ~ 14991450 (+)
G211913 NA other downstream 1484922 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1707035 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2653989 17087284 ~ 17113156 (+)

Expression


Co-expression Network