G211054 (LOC108275544)


Basic Information

Item Value
gene id G211054
gene name LOC108275544
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14461792 ~ 14462409 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250024
TGTGTACTCACTGGTTGACTTCCCAGTCTCGATAGTTATCCACCCCACAGCACTGCAGCCCGATCTGGATCTCATCTGTAAGAAACCTCAGGTCCAGGTCGTCCTGGTAGCGGGTCATGGCTGTCAGCATGGCTGAGCGCAGCAGCTCAGTAATCCAGCCCTGCAGGCTGTAGGCCACAATGGCCACCAGGACCTGAGCAGCTACAAGGACTAGCAGTGTTGCAGAGAAAGTACGTAGCAGGCAGTTGTTCTCCCTCAGTGCACCCACACAGCCTGTCAGACAAAGCATTGAAAGCAGCAAGCCCAGAAAAACTAAGAGCAGCATGGGATCAGTGCCAAGGCCATCCAGCTTCTCCTGAGCGAAGGACTCCTTGTTCACAAGACCCCAGAACCCGAGTCCTAAGGTGGCCAGGCCCAGCACAGAGAAGAGTAGGTTGCTAGTGAAAAGCACATATTTCAGCAGAAAGTCAGTAAGATTGGAGGAATTGTGGGTCTGTAAATGGGGAAAGGTCCAGGATGACAGTTTGGTTTGCTCATCATGGCTCAATGAACTTGAATCGGTTTGGCGCTCTGTGCTGATGTCTGTGCCTAGGTATTGAATGCCATTCCGAGTGGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250024 True 618 lncRNA 0.52 1 14461792 14462409

Neighbor

gene id symbol gene type direction distance location
si:dkey-282h22.5 LOC108261121 coding downstream 10197 14447240 ~ 14451595 (-)
LOC113528545 LOC108255936,LOC103153053 coding downstream 29072 14414913 ~ 14432720 (-)
LOC113527937 LOC108255917 coding downstream 51115 14394229 ~ 14410677 (-)
prpsap1 LOC105013149,LOC108255900,LOC106606986,LOC103375364,LOC101163819,LOC100700674,LOC108435871,LOC107731682 coding downstream 70698 14379035 ~ 14391094 (-)
LOC113528592 LOC108256535,LOC108435873 coding downstream 259234 14183537 ~ 14202558 (-)
LOC113528481 zgc:112320,LOC108275843,LOC101168622 coding upstream 996 14463405 ~ 14465291 (-)
LOC117599009 NA coding upstream 25412 14487821 ~ 14490775 (-)
LOC113528386 LOC108274059,LOC105908958,LOC108437141 coding upstream 229784 14692193 ~ 14709079 (-)
fscn2a LOC108274411,LOC108437142 coding upstream 270494 14732903 ~ 14738583 (-)
LOC113528036 LOC108255868 coding upstream 306198 14768607 ~ 14840369 (-)
G211003 NA non-coding downstream 131872 14329586 ~ 14329920 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding downstream 163594 14294307 ~ 14298198 (-)
G210973 NA non-coding downstream 244920 14216673 ~ 14216872 (-)
G210952 NA non-coding downstream 326488 14135094 ~ 14135304 (-)
G210915 NA non-coding downstream 592219 13869199 ~ 13869573 (-)
G211187 NA non-coding upstream 126411 14588820 ~ 14594664 (-)
G211195 socs3 non-coding upstream 156823 14619232 ~ 14621782 (-)
G211269 NA non-coding upstream 364826 14827235 ~ 14844312 (-)
G211274 NA non-coding upstream 384843 14847252 ~ 14847456 (-)
G211346 NA non-coding upstream 472260 14934669 ~ 14935121 (-)
pecam1 LOC108279165 other downstream 432151 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 455280 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 460755 13993876 ~ 14001037 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other downstream 590661 13841166 ~ 13871131 (-)
LOC117598755 NA other downstream 1062567 13395466 ~ 13399225 (-)
G211151 usp36 other upstream 57868 14520277 ~ 14520975 (-)
LOC113528445 LOC108274755 other upstream 216341 14678750 ~ 14690132 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 516210 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1688666 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 2110136 16572545 ~ 16598688 (-)

Expression


Co-expression Network