G211058


Basic Information

Item Value
gene id G211058
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14466438 ~ 14466674 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250028
tttcagagtttcttagtatttggtttgtccccttttttgctctaatgacagtgtgcacttgagctggcatggactccacaagtttgtacAAAATCTTATggtccattttagatcaaatccatcagagtgttgtctgaacacaggcttcaatagaagagattagacatgaggaaaatctgaccttttgtacaaagcagttaatatcacaaatttgcttacatttaaatagggacctag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250028 True 237 lncRNA 0.37 1 14466438 14466674

Neighbor

gene id symbol gene type direction distance location
LOC113528183 LOC108275544 coding upstream 2956 14461356 ~ 14463482 (+)
im:6904045 NA coding upstream 19275 14443634 ~ 14447163 (+)
LOC113527900 LOC108275579 coding upstream 24106 14432724 ~ 14442332 (+)
rasd4 zgc:153845,LOC108435855,LOC103035404,LOC106601411,LOC106606999 coding upstream 89989 14375095 ~ 14376449 (+)
LOC113528345 mgat5b,LOC108274344,LOC108435872,LOC107743022,LOC107562046 coding upstream 154887 14229822 ~ 14311551 (+)
LOC113527904 lgals3bp coding downstream 9572 14476246 ~ 14478966 (+)
timp2b LOC108277022 coding downstream 24714 14491388 ~ 14499569 (+)
usp36 usp36,LOC107717487,LOC104948677 coding downstream 34634 14501308 ~ 14527529 (+)
cyth1a cyth1,cyth1a,LOC106920077,LOC108277039,LOC107552117,LOC103392816,LOC104925066 coding downstream 67899 14534573 ~ 14601007 (+)
hid1a hid1,LOC107710705,LOC107698779 coding downstream 412292 14878966 ~ 14899732 (+)
G211032 NA non-coding upstream 32383 14433827 ~ 14434055 (+)
G211031 NA non-coding upstream 33143 14432370 ~ 14433295 (+)
G211006 NA non-coding upstream 86541 14378543 ~ 14379897 (+)
G210784 NA non-coding upstream 476545 13987875 ~ 13989893 (+)
G210788 NA non-coding upstream 504052 13909109 ~ 13962386 (+)
G211076 NA non-coding downstream 15139 14481813 ~ 14482016 (+)
G211101 NA non-coding downstream 95846 14562520 ~ 14563021 (+)
G211117 NA non-coding downstream 138043 14604717 ~ 14692759 (+)
LOC113528421 NA non-coding downstream 177042 14643716 ~ 14644243 (+)
G211208 NA non-coding downstream 247997 14714671 ~ 14714875 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 972496 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1020752 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2092066 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 2276368 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 2326067 12135269 ~ 12140371 (+)
socs3a socs3 other downstream 152530 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 521412 14988086 ~ 14991450 (+)
G211913 NA other downstream 1451543 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1673656 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2620610 17087284 ~ 17113156 (+)

Expression


Co-expression Network