G211101


Basic Information

Item Value
gene id G211101
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14562520 ~ 14563021 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250078
GCCATTCCTCACGCTAGAACAGGCAGCTGCATGTCCTAACTCACCCCGAATTGCAGACGAGATGCAGAACAATGATTTGTACCTAACACTGACTTCATTAATCGTCTCACTGTTAAACACGAAAAAAAACACACCGCAATTTCCAGGAGCGCAGGAACGCAGGAACATTTGCGTTTATTTGCGTGAGGATGCCAGGATGCAAAGCAGCCGAAAGCCAAGTGAATTTGTTCTTCTTTACGCTTAATATGGACACTTCCTGTCGTTTGGAAATGTTATTACTATTGAGTTACGCTATAACTGTGATGAATTGCACAAGATCAGAGGTTTGTAGGGAATCTGAGAGCATGTCAGGAGGAGAAGAGTGGGATTATGGGAGCATTATggagcaggtgtgtgtttgtgtgtgtgtttgtgtgctgacGGTTGAGGAGAATGGAGGACTGAGCAGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250078 True 451 lncRNA 0.45 2 14562520 14563021

Neighbor

gene id symbol gene type direction distance location
usp36 usp36,LOC107717487,LOC104948677 coding upstream 34991 14501308 ~ 14527529 (+)
timp2b LOC108277022 coding upstream 62951 14491388 ~ 14499569 (+)
LOC113527904 lgals3bp coding upstream 83554 14476246 ~ 14478966 (+)
LOC113528183 LOC108275544 coding upstream 99038 14461356 ~ 14463482 (+)
im:6904045 NA coding upstream 115357 14443634 ~ 14447163 (+)
hid1a hid1,LOC107710705,LOC107698779 coding downstream 315945 14878966 ~ 14899732 (+)
ush1ga ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446 coding downstream 349168 14912189 ~ 14920677 (+)
LOC113528525 LOC108260868 coding downstream 364532 14927553 ~ 14932006 (+)
zgc:112148 tvp23b,LOC105899270,LOC108437154 coding downstream 372216 14935237 ~ 14941094 (+)
stk19 stk19 coding downstream 411555 14974576 ~ 14979006 (+)
G211076 NA non-coding upstream 80504 14481813 ~ 14482016 (+)
G211058 NA non-coding upstream 95846 14466438 ~ 14466674 (+)
G211032 NA non-coding upstream 128465 14433827 ~ 14434055 (+)
G211031 NA non-coding upstream 129225 14432370 ~ 14433295 (+)
G211006 NA non-coding upstream 182623 14378543 ~ 14379897 (+)
G211117 NA non-coding downstream 41696 14604717 ~ 14692759 (+)
LOC113528421 NA non-coding downstream 80695 14643716 ~ 14644243 (+)
G211208 NA non-coding downstream 151650 14714671 ~ 14714875 (+)
LOC113527943 NA non-coding downstream 275269 14838290 ~ 14844372 (+)
G211247 NA non-coding downstream 281401 14844422 ~ 14844562 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 1068578 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1116834 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2188148 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 2372450 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 2422149 12135269 ~ 12140371 (+)
socs3a socs3 other downstream 56183 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 425065 14988086 ~ 14991450 (+)
G211913 NA other downstream 1355196 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1577309 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2524263 17087284 ~ 17113156 (+)

Expression


Co-expression Network