G211117


Basic Information

Item Value
gene id G211117
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14604717 ~ 14692759 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250095
aaaaaaaaaaaagaaataaaaaaaaaaaaaaaaaagaaagaaagaaagaaagaaaaaaaaaacaaaaacaaaagatgtAACATGCAAAtcacaaagtaaaacaaaattGCACATAAATTGACAACAATACTgcaatcacagaaaaaaaactaaacaaataagTAGTGCAAATGTACTGAAGTGCTACCATATGACAATCGTAAAACTTTTGAAAGACACTCTCGTAAAAATCAGATTACATCTTGGAGAATTGGTACAACAGAACAATATGACAAGTCATGTAGCAGTATTCATTACAGACCTGGAAAACATGCAACATGGAGTTGTATAGACTATTAATAGACAACACTTTTAAACTTAAGGGAATTTAAGGGATTGCTCAATTCCAGTTACAGCATCTAGCTGTATTATCCATGCAACATCACGAATATAGAGAAGGAAATCAGCCAGGTTCTATGAATCTACCTGTGTGATCATGAGAAGTTGATATAAAACTGCATTAAAGAGGTTAAAGAATAATGCCATTCAGTATATACAAGGATGGTAGCGCAGCTTTGGACCACGTCCTTTCCAAGCATACAAGGAAAAGACAAACGCCATTTAGCCTTCCATGGCTAGTTTGATAATGTCGCCTCTTCTTGATTTTGCTGCTTCCTCAAACTTCTCAATTACTTGTTTGCAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250095 True 684 lncRNA 0.33 2 14604717 14692759

Neighbor

gene id symbol gene type direction distance location
cyth1a cyth1,cyth1a,LOC106920077,LOC108277039,LOC107552117,LOC103392816,LOC104925066 coding upstream 3710 14534573 ~ 14601007 (+)
usp36 usp36,LOC107717487,LOC104948677 coding upstream 77188 14501308 ~ 14527529 (+)
timp2b LOC108277022 coding upstream 105148 14491388 ~ 14499569 (+)
LOC113527904 lgals3bp coding upstream 125751 14476246 ~ 14478966 (+)
LOC113528183 LOC108275544 coding upstream 141235 14461356 ~ 14463482 (+)
hid1a hid1,LOC107710705,LOC107698779 coding downstream 186207 14878966 ~ 14899732 (+)
ush1ga ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446 coding downstream 219430 14912189 ~ 14920677 (+)
LOC113528525 LOC108260868 coding downstream 234794 14927553 ~ 14932006 (+)
zgc:112148 tvp23b,LOC105899270,LOC108437154 coding downstream 242478 14935237 ~ 14941094 (+)
stk19 stk19 coding downstream 281817 14974576 ~ 14979006 (+)
G211101 NA non-coding upstream 41696 14562520 ~ 14563021 (+)
G211076 NA non-coding upstream 122701 14481813 ~ 14482016 (+)
G211058 NA non-coding upstream 138043 14466438 ~ 14466674 (+)
G211032 NA non-coding upstream 170662 14433827 ~ 14434055 (+)
G211031 NA non-coding upstream 171422 14432370 ~ 14433295 (+)
G211208 NA non-coding downstream 21912 14714671 ~ 14714875 (+)
LOC113527943 NA non-coding downstream 145531 14838290 ~ 14844372 (+)
G211247 NA non-coding downstream 151663 14844422 ~ 14844562 (+)
G211287 NA non-coding downstream 207017 14899776 ~ 14900306 (+)
G211338 NA non-coding downstream 317383 15010142 ~ 15010651 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 1110775 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1159031 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2230345 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 2414647 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 2464346 12135269 ~ 12140371 (+)
LOC117598752 NA other downstream 295327 14988086 ~ 14991450 (+)
G211913 NA other downstream 1225458 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1447571 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2394525 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 3005914 17698673 ~ 17733006 (+)

Expression


Co-expression Network