socs3a (socs3)


Basic Information

Item Value
gene id socs3a
gene name socs3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14619204 ~ 14621788 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250097
CACTACAACAGCAGGCTGGAAGCTAAGCACTTCCTTCCACAGAGAGATTCACAAGTCACAAAGGATTTACCCAGCGATCCGATCAGCCTGTGGAGTGCTTCTCGCACTTTGCGGATATAATTCAATACTTCAAGACCACTACAGGACATTCAGCTGCAAGACGCAGTACCAGATTGTCCACCAGACATGGCTACGACTCCAGCAGAGTGGCTTCTACTGGGCCTCGATCAACGGAAAGGAGGCAGGCGCTCTGCTGGCAAAGGAGCCGAGCGGCACCTTCCTGATCCGTGACAGCGCCGACCGGCGGCACTTCTTCACGCTGAGTGTCAAGACATCATCAGGCACCAAGAATGTCCGTGTGCAGTGTGACAACCGCTCTTTCTACCTGCAGACAGATCCTGAGGGTGAGCGGACAGCCCCACGGTTTGACTGTGTGCTCAAGCTTGTGTACCACTATATGAATACGCCAAAACAACCCAAGGACCAATCACGAAGTGCATGCTACATCTACACAGGAGGGGAGAAGGTTCCTCTGGAACTGTGCAAACCCTTCACCTGCAACATGTCCTCACTGCAGCACCTGTGCAGAAAGACAGTCAATGGCCATCTGGGTGTTTTGCCCACGAGGGACCAGCTGCCTCAGCCACTAAAGGACTTTCTGCAGGAGTATGACGCCCCCATTTAAATGACAAATACAAGTGATGTGATGTAGTCGCACTGATATCAAGGAGTAGAGCAGCTAAGAGAATGGAAATGATGGAATGGAATAACTAGTGTGGTGTGGGCTCATGGCCATCAGGCACAAGATGGGAAAAGATCAAGAAGATCTACAGTGAATGAAAAAGTGATGAAAGTAAACAAAGCTAGGCATAGATAGACTAGGGCAACAGGAGACTGAGTTCAGAAAGTTGAAACTCTGCAAACTCATCTAACTTCAGGGAGCAGAGATTTGGAGTATAACTAATTGGTCTGAGTTTTGGATTAGTCAACACAAACCAAGAATGCTGCTATTTGTCAAGTTGGGAGAGATGAATCCCCTGAACTCCCTCGGACACTCCTATTTGCACAAGAAATTAACATCAAGACAATGGTCCACTGTTTAGTTCTTTTAGCAACTGCAACAAGTCAGGAAGAGTTAGCAAGTGTAAAAGACTGTCTTTGTGAATGGAACAGTTGCAGTATTTCTCTGCCTTTTTAACGTCAACCACTCTTCATGCCCCAATGGGAACTGGTCTCAGCCTCCTCTGTGCCCAAAATATAAGGAACGATCCTGTCTGGACATTTAACAGAAACCAGTCACCACCTTCTTCCAAGGAAGCATTATGTCTTTCGTGGAAAAAGGAAGAACTAAACAAGCAACAGTAACGCAACCAAGCTAGGAGAGAAATTTGAGAATACACAAAACAATCATAGAAAAATGTTTCTACTGGTTTAGATCAAATCCTGTATGGGGAAACAGGCCATTAAA
>XM_026916947.2
gagtgagagagcgagcgCTACATCTCACTACAACAGCAGGCTGGAAGCTAAGCACTTCCTTCCACAGAGAGATTCACAAGTCACAAAGGATTTACCCAGCGATCCGATCAGCCTGTGGAGTGCTTCTCGCACTTTGCGGATATAATTCAATACTTCAAGACCACTACAGGTACCTCTCTATCCGACATTTATTCCAGTTTATGCGTGTACAAAGCACCATGGTCACACACAGCAAGTTCAACATTGCAATGAGCACCTTCACTCCTTACTGCTACAGGACATTCAGCTGCAAGACGCAGTACCAGATTGTCCACCAGACATGGCTACGACTCCAGCAGAGTGGCTTCTACTGGGCCTCGATCAACGGAAAGGAGGCAGGCGCTCTGCTGGCAAAGGAGCCGAGCGGCACCTTCCTGATCCGTGACAGCGCCGACCGGCGGCACTTCTTCACGCTGAGTGTCAAGACATCATCAGGCACCAAGAATGTCCGTGTGCAGTGTGACAACCGCTCTTTCTACCTGCAGACAGATCCTGAGGGTGAGCGGACAGCCCCACGGTTTGACTGTGTGCTCAAGCTTGTGTACCACTATATGAATACGCCAAAACAACCCAAGGACCAATCACGAAGTGCATGCTACATCTACACAGGAGGGGAGAAGGTTCCTCTGGAACTGTGCAAACCCTTCACCTGCAACATGTCCTCACTGCAGCACCTGTGCAGAAAGACAGTCAATGGCCATCTGGGTGTTTTGCCCACGAGGGACCAGCTGCCTCAGCCACTAAAGGACTTTCTGCAGGAGTATGACGCCCCCATTTAAATGACAAATACAAGTGATGTGATGTAGTCGCACTGATATCAAGGAGTAGAGCAGCTAAGAGAATGGAAATGATGGAATGGAATAACTAGTGTGGTGTGGGCTCATGGCCATCAGGCACAAGATGGGAAAAGATCAAGAAGATCTACAGTGAATGAAAAAGTGATGAAAGTAAACAAAGCTAGGCATAGATAGACTAGGGCAACAGGAGACTGAGTTCAGAAAGTTGAAACTCTGCAAACTCATCTAACTTCAGGGAGCAGAGATTTGGAGTATAACTAATTGGTCTGAGTTTTGGATTAGTCAACACAAACCAAGAATGCTGCTATTTGTCAAGTTGGGAGAGATGAATCCCCTGAACTCCCTCGGACACTCCTATTTGCACAAGAAATTAACATCAAGACAATGGTCCACTGTTTAGTTCTTTTAGCAACTGCAACAAGTCAGGAAGAGTTAGCAAGTGTAAAAGACTGTCTTTGTGAATGGAACAGTTGCAGTATTTCTCTGCCTTTTTAACGTCAACCACTCTTCATGCCCCAATGGGAACTGGTCTCAGCCTCCTCTGTGCCCAAAATATAAGGAACGATCCTGTCTGGACATTTAACAGAAACCAGTCACCACCTTCTTCCAAGGAAGCATTATGTCTTTCGTGGAAAAAGGAAGAACTAAACAAGCAACAGTAACGCAACCAAGCTAGGAGAGAAATTTGAGAATACACAAAACAATCATAGAAAAATGTTTCTACTGGTTTAGATCAAATCCTGTATGGGGAAACAGGCCATTAAAGAAATGACGAAAAAgcactgtaatgtttttttttttttttttttacttcattgaGTAATCTTTGTACAGCGTGTATTTCTTAGAACGTGACAAGGCAGTAGCAGAAAGTGCTTGCTTATGAATGTATTTAGATGGAGAAACTTAACCCTGTTAAATGGACCAGTGTATACCCTCATATTATTCTTGTACttgtttacattgtttacaTGTGTGaagatttttattcataatgCTAAGTCTGTTAATGTGACTCCATATGAATGCTTGAAAAAAACAATCCATTGAAATAGCAAAAAGCAAGCAGACTGAAAATACTttgcacatatttatatttctgagcAGTTTCAGTAATTTATATTAAAGAGCACTATTTTTCTAACA

Function

symbol description
socs3 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Involved in negative regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in cytosol. Predicted to be part of phosphatidylinositol 3-kinase complex. Implicated in atopic dermatitis 4. Biomarker of ductal carcinoma in situ; human immunodeficiency virus infectious disease; invasive ductal carcinoma; obesity; and type 2 diabetes mellitus.

NR:

description
PREDICTED: suppressor of cytokine signaling 3-like

GO:

id name namespace
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250097 False 1468 lncRNA 0.47 2 14619229 14621407
XM_026916947.2 True 1982 mRNA 0.43 2 14619204 14621788

Neighbor

gene id symbol gene type direction distance location
cyth1a cyth1,cyth1a,LOC106920077,LOC108277039,LOC107552117,LOC103392816,LOC104925066 coding upstream 18197 14534573 ~ 14601007 (+)
usp36 usp36,LOC107717487,LOC104948677 coding upstream 91675 14501308 ~ 14527529 (+)
timp2b LOC108277022 coding upstream 119635 14491388 ~ 14499569 (+)
LOC113527904 lgals3bp coding upstream 140238 14476246 ~ 14478966 (+)
LOC113528183 LOC108275544 coding upstream 155722 14461356 ~ 14463482 (+)
hid1a hid1,LOC107710705,LOC107698779 coding downstream 257178 14878966 ~ 14899732 (+)
ush1ga ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446 coding downstream 290401 14912189 ~ 14920677 (+)
LOC113528525 LOC108260868 coding downstream 305765 14927553 ~ 14932006 (+)
zgc:112148 tvp23b,LOC105899270,LOC108437154 coding downstream 313449 14935237 ~ 14941094 (+)
stk19 stk19 coding downstream 352788 14974576 ~ 14979006 (+)
G211101 NA non-coding upstream 56183 14562520 ~ 14563021 (+)
G211076 NA non-coding upstream 137188 14481813 ~ 14482016 (+)
G211058 NA non-coding upstream 152530 14466438 ~ 14466674 (+)
G211032 NA non-coding upstream 185149 14433827 ~ 14434055 (+)
G211031 NA non-coding upstream 185909 14432370 ~ 14433295 (+)
LOC113528421 NA non-coding downstream 21928 14643716 ~ 14644243 (+)
G211208 NA non-coding downstream 92883 14714671 ~ 14714875 (+)
LOC113527943 NA non-coding downstream 216502 14838290 ~ 14844372 (+)
G211247 NA non-coding downstream 222634 14844422 ~ 14844562 (+)
G211287 NA non-coding downstream 277988 14899776 ~ 14900306 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 1125262 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1173518 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2244832 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 2429134 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 2478833 12135269 ~ 12140371 (+)
LOC117598752 NA other downstream 366298 14988086 ~ 14991450 (+)
G211913 NA other downstream 1296429 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1518542 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2465496 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 3076885 17698673 ~ 17733006 (+)

Expression


Co-expression Network