G211195 (socs3)


Basic Information

Item Value
gene id G211195
gene name socs3
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14619232 ~ 14621782 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250195
AAAAATAGTGCTCTTTAATATAAATTACTGAAACTgctcagaaatataaatatgtgcaaAGTATTTTCAGTCTGCTTGCTTTTTGCTATTTCAATGGATTGTTTTTTTCAAGCATTCATAAGCAAGCACTTTCTGCTACTGCCTTGTCACGTTCTAAGAAATACACGCTGTACAAAGATTACtcaatgaagtaaaaaaaaaaaaaaaaaaacattacagtgcTTTTTCGTCATTTCTTTAATGGCCTGTTTCCCCATACAGGATTTGATCTAAACCAGTAGAAACATTTTTCTATGATTGTTTTGTGTATTCTCAAATTTCTCTCCTAGCTTGGTTGCGTTACTGTTGCTTGTTTAGTTCTTCCTTTTTCCACGAAAGACATAATGCTTCCTTGGAAGAAGGTGGTGACTGGTTTCTGTTAAATGTCCAGACAGGATCGTTCCTTATATTTTGGGCACAGAGGAGGCTGAGACCAGTTCCCATTGGGGCATGAAGAGTGGTTGACGTTAAAAAGGCAGAGAAATACTGCAACTGTTCCATTCACAAAGACAGTCTTTTACACTTGCTAACTCTTCCTGACTTGTTGCAGTTGCTAAAAGAACTAAACAGTGGACCATTGTCTTGATGTTAATTTCTTGTGCAAATAGGAGTGTCCGAGGGAGTTCAGGGGATTCATCTCTCCCAACTTGACAAATAGCAGCATTCTTGGTTTGTGTTGACTAATCCAAAACTCAGACCAATTAGTTATACTCCAAATCTCTGCTCCCTGAAGTTAGATGAGTTTGCAGAGTTTCAACTTTCTGAACTCAGTCTCCTGTTGCCCTAGTCTATCTATGCCTAGCTTTGTTTACTTTCATCACTTTTTCATTCACTGTAGATCTTCTTGATCTTTTCCCATCTTGTGCCTGATGGCCATGAGCCCACACCACACTAGTTATTCCATTCCATCATTTCCATTCTCTTAGCTGCTCTACTCCTTGATATCAGTGCGACTACATCACATCACTTGTATTTGTCATTTAAATGGGGGCGTCATACTCCTGCAGAAAGTCCTTTAGTGGCTGAGGCAGCTGGTCCCTCGTGGGCAAAACACCCAGATGGCCATTGACTGTCTTTCTGCACAGGTGCTGCAGTGAGGACATGTTGCAGGTGAAGGGTTTGCACAGTTCCAGAGGAACCTTCTCCCCTCCTGTGTAGATGTAGCATGCACTTCGTGATTGGTCCTTGGGTTGTTTTGGCGTATTCATATAGTGGTACACAAGCTTGAGCACACAGTCAAACCGTGGGGCTGTCCGCTCACCCTCAGGATCTGTCTGCAGGTAGAAAGAGCGGTTGTCACACTGCACACGGACATTCTTGGTGCCTGATGATGTCTTGACACTCAGCGTGAAGAAGTGCCGCCGGTCGGCGCTGTCACGGATCAGGAAGGTGCCGCTCGGCTCCTTTGCCAGCAGAGCGCCTGCCTCCTTTCCGTTGATCGAGGCCCAGTAGAAGCCACTCTGCTGGAGTCGTAGCCATGTCTGGTGGACAATCTGGTACTGCGTCTTGCAGCTGAATGTCCTGTAGCAGTAAGGAGTGAAGGTGCTCATTGCAATGTTGAACTTGCTGTGTGTGACCATGGTGCTTTGTACACGCATAAACTGGAATAAATGTCGGATAGAGAGGTACCtagggagaaggaggagagatgTGTTAGAACCATAGAGTAGGACAAACTATGAGGACAGACAGCTTTTTAGAGAGGGAGACTTTGGTCACGTATCTCAAGCCATGTGTTTAGTATAGGTCATAGTACTATACATGAAACAGGGAATAACACTCAAGAAAACAGTAAAGTTCTTAGATGGAGAGGTCTGATGGATAAGAGACA
>TU250196
AAAAATAGTGCTCTTTAATATAAATTACTGAAACTgctcagaaatataaatatgtgcaaAGTATTTTCAGTCTGCTTGCTTTTTGCTATTTCAATGGATTGTTTTTTTCAAGCATTCATAAGCAAGCACTTTCTGCTACTGCCTTGTCACGTTCTAAGAAATACACGCTGTACAAAGATTACtcaatgaagtaaaaaaaaaaaaaaaaaaacattacagtgcTTTTTCGTCATTTCTTTAATGGCCTGTTTCCCCATACAGGATTTGATCTAAACCAGTAGAAACATTTTTCTATGATTGTTTTGTGTATTCTCAAATTTCTCTCCTAGCTTGGTTGCGTTACTGTTGCTTGTTTAGTTCTTCCTTTTTCCACGAAAGACATAATGCTTCCTTGGAAGAAGGTGGTGACTGGTTTCTGTTAAATGTCCAGACAGGATCGTTCCTTATATTTTGGGCACAGAGGAGGCTGAGACCAGTTCCCATTGGGGCATGAAGAGTGGTTGACGTTAAAAAGGCAGAGAAATACTGCAACTGTTCCATTCACAAAGACAGTCTTTTACACTTGCTAACTCTTCCTGACTTGTTGCAGTTGCTAAAAGAACTAAACAGTGGACCATTGTCTTGATGTTAATTTCTTGTGCAAATAGGAGTGTCCGAGGGAGTTCAGGGGATTCATCTCTCCCAACTTGACAAATAGCAGCATTCTTGGTTTGTGTTGACTAATCCAAAACTCAGACCAATTAGTTATACTCCAAATCTCTGCTCCCTGAAGTTAGATGAGTTTGCAGAGTTTCAACTTTCTGAACTCAGTCTCCTGTTGCCCTAGTCTATCTATGCCTAGCTTTGTTTACTTTCATCACTTTTTCATTCACTGTAGATCTTCTTGATCTTTTCCCATCTTGTGCCTGATGGCCATGAGCCCACACCACACTAGTTATTCCATTCCATCATTTCCATTCTCTTAGCTGCTCTACTCCTTGATATCAGTGCGACTACATCACATCACTTGTATTTGTCATTTAAATGGGGGCGTCATACTCCTGCAGAAAGTCCTTTAGTGGCTGAGGCAGCTGGTCCCTCGTGGGCAAAACACCCAGATGGCCATTGACTGTCTTTCTGCACAGGTGCTGCAGTGAGGACATGTTGCAGGTGAAGGGTTTGCACAGTTCCAGAGGAACCTTCTCCCCTCCTGTGTAGATGTAGCATGCACTTCGTGATTGGTCCTTGGGTTGTTTTGGCGTATTCATATAGTGGTACACAAGCTTGAGCACACAGTCAAACCGTGGGGCTGTCCGCTCACCCTCAGGATCTGTCTGCAGGTAGAAAGAGCGGTTGTCACACTGCACACGGACATTCTTGGTGCCTGATGATGTCTTGACACTCAGCGTGAAGAAGTGCCGCCGGTCGGCGCTGTCACGGATCAGGAAGGTGCCGCTCGGCTCCTTTGCCAGCAGAGCGCCTGCCTCCTTTCCGTTGATCGAGGCCCAGTAGAAGCCACTCTGCTGGAGTCGTAGCCATGTCTGGTGGACAATCTGGTACTGCGTCTTGCAGCTGAATGTCCTGTAGCAGTAAGGAGTGAAGGTGCTCATTGCAATGTTGAACTTGCTGTGTGTGACCATGGTGCTTTGTACACGCATAAACTGGAATAAATGTCGGATAGAGAGGTACCTGTAGTGGTCTTGAAGTATTGAATTATATCCGCAAAGTGCGAGAAGCACTCCACAGGCTGATCGGATCGCTGGGTAAATCCTTTGTGACTTGTGAATCTCTCTGTGGAAGGAAGTGCTTAGCTTCCAGCCTGCTGTTGTA

Function

symbol description
socs3 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Involved in negative regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in cytosol. Predicted to be part of phosphatidylinositol 3-kinase complex. Implicated in atopic dermatitis 4. Biomarker of ductal carcinoma in situ; human immunodeficiency virus infectious disease; invasive ductal carcinoma; obesity; and type 2 diabetes mellitus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250195 True 1870 lncRNA 0.44 2 14619774 14621782
TU250196 False 1809 lncRNA 0.44 3 14619232 14621782

Neighbor

gene id symbol gene type direction distance location
LOC117599009 NA coding downstream 128457 14487821 ~ 14490775 (-)
LOC113528481 zgc:112320,LOC108275843,LOC101168622 coding downstream 153941 14463405 ~ 14465291 (-)
si:dkey-282h22.5 LOC108261121 coding downstream 167637 14447240 ~ 14451595 (-)
LOC113528545 LOC108255936,LOC103153053 coding downstream 186512 14414913 ~ 14432720 (-)
LOC113527937 LOC108255917 coding downstream 208555 14394229 ~ 14410677 (-)
LOC113528386 LOC108274059,LOC105908958,LOC108437141 coding upstream 70411 14692193 ~ 14709079 (-)
fscn2a LOC108274411,LOC108437142 coding upstream 111121 14732903 ~ 14738583 (-)
LOC113528036 LOC108255868 coding upstream 146825 14768607 ~ 14840369 (-)
LOC113527964 LOC108260935 coding upstream 253553 14875335 ~ 14878123 (-)
otop2 otop2 coding upstream 279051 14900833 ~ 14909395 (-)
G211187 NA non-coding downstream 24568 14588820 ~ 14594664 (-)
G211054 LOC108275544 non-coding downstream 156823 14461792 ~ 14462409 (-)
G211003 NA non-coding downstream 289312 14329586 ~ 14329920 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding downstream 321034 14294307 ~ 14298198 (-)
G210973 NA non-coding downstream 402360 14216673 ~ 14216872 (-)
G211269 NA non-coding upstream 205453 14827235 ~ 14844312 (-)
G211274 NA non-coding upstream 225470 14847252 ~ 14847456 (-)
G211346 NA non-coding upstream 312887 14934669 ~ 14935121 (-)
G211349 NA non-coding upstream 379163 15000945 ~ 15001328 (-)
G211363 NA non-coding upstream 413387 15035169 ~ 15036895 (-)
G211151 usp36 other downstream 98257 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 589591 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 612720 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 618195 13993876 ~ 14001037 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other downstream 748101 13841166 ~ 13871131 (-)
LOC113528445 LOC108274755 other upstream 56968 14678750 ~ 14690132 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 356837 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1529293 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 1950763 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 2139450 16761232 ~ 16765341 (-)

Expression


Co-expression Network