G211208


Basic Information

Item Value
gene id G211208
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14714671 ~ 14714875 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250211
cctccaccatatttgacacatgatgtggtatactttggatcatgagctgttcctttctttcgccatacttttctcttcccatcattctggtacaagttaatcttggtttcatcagtccaaagaatcttattccagaacatgggaggcttttttagatgttttctggcaaagtctaatctggctttcctgttcttgaatgttacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250211 True 205 lncRNA 0.39 1 14714671 14714875

Neighbor

gene id symbol gene type direction distance location
cyth1a cyth1,cyth1a,LOC106920077,LOC108277039,LOC107552117,LOC103392816,LOC104925066 coding upstream 113664 14534573 ~ 14601007 (+)
usp36 usp36,LOC107717487,LOC104948677 coding upstream 187142 14501308 ~ 14527529 (+)
timp2b LOC108277022 coding upstream 215102 14491388 ~ 14499569 (+)
LOC113527904 lgals3bp coding upstream 235705 14476246 ~ 14478966 (+)
LOC113528183 LOC108275544 coding upstream 251189 14461356 ~ 14463482 (+)
hid1a hid1,LOC107710705,LOC107698779 coding downstream 164091 14878966 ~ 14899732 (+)
ush1ga ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446 coding downstream 197314 14912189 ~ 14920677 (+)
LOC113528525 LOC108260868 coding downstream 212678 14927553 ~ 14932006 (+)
zgc:112148 tvp23b,LOC105899270,LOC108437154 coding downstream 220362 14935237 ~ 14941094 (+)
stk19 stk19 coding downstream 259701 14974576 ~ 14979006 (+)
G211117 NA non-coding upstream 21912 14604717 ~ 14692759 (+)
LOC113528421 NA non-coding upstream 70428 14643716 ~ 14644243 (+)
G211101 NA non-coding upstream 151650 14562520 ~ 14563021 (+)
G211076 NA non-coding upstream 232655 14481813 ~ 14482016 (+)
G211058 NA non-coding upstream 247997 14466438 ~ 14466674 (+)
LOC113527943 NA non-coding downstream 123415 14838290 ~ 14844372 (+)
G211247 NA non-coding downstream 129547 14844422 ~ 14844562 (+)
G211287 NA non-coding downstream 184901 14899776 ~ 14900306 (+)
G211338 NA non-coding downstream 295267 15010142 ~ 15010651 (+)
LOC117598819 NA non-coding downstream 488647 15203522 ~ 15204658 (+)
socs3a socs3 other upstream 92883 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 1220729 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1268985 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2340299 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 2524601 12158703 ~ 12190070 (+)
LOC117598752 NA other downstream 273211 14988086 ~ 14991450 (+)
G211913 NA other downstream 1203342 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1425455 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2372409 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 2983798 17698673 ~ 17733006 (+)

Expression


Co-expression Network