G211269


Basic Information

Item Value
gene id G211269
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14827235 ~ 14844312 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250303
TGACATTCATGTGCTGTTGGTGGGCATGCAaagctttatttaataatataactgCACAAAAGAATCAACCAAATGGAGTTATTTTAATACCACTCTGCATTCTGAGCTTCAtaatctattattaaaaaatggctACATAATTTACTAgtctttttatataaatattaaggACAAGAGACCCTAAAAGTTCAGCTAATCTCACGTCTTTCAGCGTTTTCAATTATGGCAGCTCAAAATGGCTTCCAATCTAAACCTGTCAGGGCACGGTCGttttaaattattcatacagattatatggatttttttttttTTAAACCTAGTTTTCTGTTTCATCTTTCAAATGACAGTGCTGTGAGTCTTTTGAGTGACATTTCGAGCAGTGCATGCTCATTCCTACCCATTTGTTCTGCACATTTGTGCCATTTGGGGaaaaagacaacaacaacaaaaaaacatggtcACACTTTGCGTGTTTGGCATGAGGTCTGGGCTGGCACGGACATTTGAAAAGCAGAGAAACAAATAATGTGATGAGCAGTCATGACAGTTGGATAATGATGCTAGTGTCCGTGTTTGCAAACGGGTCAATGAAGACCCTCTTGTAGTACCTAGTGTAGCATCTTAGAAACCGTGCAGCTTGTTTCTCTAGAACTCTGGCGAACCCTCTGGTTTGCGTGTGTATTCTTGCTGGTGGTCCAAAATCTTAAGTAACCCGTTTTCCagttctgtctgtgtttgttcaACGTGCAGGAATCCGCTCAGAGATGGTGTGGacgcctgtgtgtctgtctaccTGCTAGGTTGGTGGAACCTATTAGGGTCAAGGTTTATTTGTTGATCGTGTCAGCAGTGCACGGCATCACTGGGGGGTGAGAGTCTGCCTGAGGTGTGTGAGAGCCGTCAATGCATATGTGTGCGCAAGAGAGTGCCAAGTGCCCTACAGTGTAGCAGCGTACCTCACCCTTCCCACACTGCGGGCCAGGCAGGTCAAACACAAAGGAGACGAGCAGGCCGGGCAACACCTTCCTGTATCGCGTTACCAGTCTTTCATTTCAAAACGCCACTGTCTATTTTTACACTTCAGCTGAGTAAGCGCCATTCAGCataggaagagagagagagagggggggagagagaggagagagatgccAAGGCAACCAGAACAAAGAGATATTTAGAGAACTTGGAAACAGGTGAAGTAgattcttcctttctctctcactccttcttccttccttccttcctttcttcctttcttcttccttccttccttccctcattcattcattcattcattcattcatccatcctaGTCATAGAGATTATAATAGCTAAAAGACCTGAGGTGTTATGTATAAAATTCTTCCTGgatttaaaaccaaaaaaaaaaacgcatttCTGGACCCCAGATCCTGTACATACCTTTCTAGAATAtgcaaaaaactgaaaataaccCATAATGTTCACTCTCTTGCTAAGACACAATGGAAAAAGCTGCAAGTAAACCAATCAAAAGGAAAAACTACAATGATTGTAAGACATTATATAAGTGGCACTCTGTACAAAAGAAATACgaaatataattacatataatcTTCAAAACATGTCTCGATATAATTTGTATAAtccaaaaatattttgacaGAATTCTCactattacatacatttatgttttttcttccttACGACATATATTTAACGTATATTTTGAATCTAAGGAATTGGAATGTAGTCTGACGTGAAAGAAGAGTCATTGCCCTCTGGGTGAGTCGATGCTGAATCATTGTAAATAAGTCCAATTTAAAGGAACGTTTCCTGACAGAAAGCAGCCAGCACATGCAAGGTTATGCAATGTTGTTTTCTCTGTTTAACACAGGCAATATAAAGGACTAACATTAAACGTCTTATCTTACCAACAAGCCAGCAAACTTGCACAACTCCAACCTGAATTGTCTTTCCAGCACTGTTCCTCAGAACGCAAGATATCACTGATtgagtgaaaatgcttctggcTGACATAAGCACATTCATTCCCTTAATGTCCTTTATTGCATTGCAAGAGCAACTGATTgcgtatacagtatattctgtgATATTGAAATATTCAGGTAGTTTCACTATTTTGAAATTTGGAGTTTTCAGTATAAAAACCCAGAAAGACATGTGTCTGACTTAAGGATTACTTTTTATATGGAACAACTGACGGAAACTGACTTACACAACCTTTATGGTGTGTTTAAAACGTTTATACACGAGTCTTCTGGAGATCTATAGCAGAGGTTGAACCGGTGTTCAGCTGCCAATAATAATTTGCTTCATATGTTCATGACGCAAAAATCAGAAGACGTTCTGAGGCGGGCAAAGCATTACATTTTTTGTGATTGATGCTCGTGAATTGTGTTTAACATCACATGAACTaataaggagaaaaaagatCAGAAAAAAGATCCTTTTTAATGTCAGATTGTCTTTTAAACTCGCTTGTTTCCATCTCTTTACATCTCGATTGTTGGAAAAATATTTCGAAGACTGaatttttgttcattattccacagaattcttgaatctgattggtcagaaagtgattaattttctgtaacagcacggcttggacagtagttctgACTTCAAGGTTTTTAGCCTGTAATGCATTAATGCGTtgctgtttctatagcaacaattTACGCAGGGACTTTGTGGAGGGGATTTAAAAATGCGTGTATTCATTGATATGGTcacgttttctgtgaggatgtgtttatttagcatttttggagggagtctccaatgtcagcacttCGTAACAGCTGTAAGTTTAAATTTTCAGGATGGAGCGCTTTGAcctttctggtttctcaatagcttgacaagctgcatttttttgtctaattaacttcgagagagagaaaaaagggctTATGACGGagtgactatttatagctgctgtaacgtatatgataacaggaacaaccTTGCCTTGAGGATGTTCCATTCATTCGGGGTAACTGATAAAAACTACCATAAAAAAACTAACATTTTAAGTGTtgccaaactgctgtggtataagaggaataaaacacttcaggatgtgctgttatgggaaaataattgaCTTTGCTTTACATTGGGTTGCATTGCAccactctgtcattgattattttcctataacagcaagtgtcTCATTCCATACATAATTTATACTGGGCTGTAAATACAAACAGTCACAGCAAGATCAGTGTATACTTTTTTTCAGGACAGGACACATTAGCAATCCTTAAATCCTATCAATGTAAAAACAGAAGGCATGTGGTGAATACGTTGCCTTGTCAAATCTCTGGTGGAATCATGGGTAGTTATAgatagttatatagttatagcTATACATGCTCTACCAGCAGACTGTGGAGATTTTTCAAATGGAATGAGTTTCAGAGAGGCACTTGTGTCAGTGAGGGATTCTGGGAATCGAGTTTTCAATTGGCGATGTTCAGGCGTGCACAGATCTGGTCGTTTCCTTTTGTGTGATGCATTATTTGAAAAGCCATCTTGCCTTAACACCCTTGAGTTTTGATTCGTaatggttttaaaataaaaggctctttctgtctgtctgtctgtctgtcttcctctttCGTCTCACGGCTTCCCATCAGGCTACCTGTGTGCCTCCTGCTACATCGCACATGACATCTGTTAGTCATTATTAACATCGGACGCACAAAAGCCAGattatgtgtttttaatttcagttttattattgGATTCTCAGAGAGGGCCGTTGTGGAGAGGACGGATTGTGAGAGCAGGTGGGGAGGCGTGCAGACACAGACCCGATTGTCTCTCTAGGGAACTTGTGGAga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250303 True 3860 lncRNA 0.39 2 14827235 14844312

Neighbor

gene id symbol gene type direction distance location
fscn2a LOC108274411,LOC108437142 coding downstream 88652 14732903 ~ 14738583 (-)
LOC113528386 LOC108274059,LOC105908958,LOC108437141 coding downstream 118156 14692193 ~ 14709079 (-)
LOC117599009 NA coding downstream 336460 14487821 ~ 14490775 (-)
LOC113528481 zgc:112320,LOC108275843,LOC101168622 coding downstream 361944 14463405 ~ 14465291 (-)
si:dkey-282h22.5 LOC108261121 coding downstream 375640 14447240 ~ 14451595 (-)
LOC113527964 LOC108260935 coding upstream 31023 14875335 ~ 14878123 (-)
otop2 otop2 coding upstream 56521 14900833 ~ 14909395 (-)
amn amn coding upstream 87604 14931916 ~ 14934161 (-)
LOC113528557 LOC108260380 coding upstream 97591 14941903 ~ 14947534 (-)
LOC113528182 LOC108274645,LOC108274429 coding upstream 110746 14955058 ~ 14972584 (-)
G211195 socs3 non-coding downstream 205453 14619232 ~ 14621782 (-)
G211187 NA non-coding downstream 232571 14588820 ~ 14594664 (-)
G211054 LOC108275544 non-coding downstream 364826 14461792 ~ 14462409 (-)
G211003 NA non-coding downstream 497315 14329586 ~ 14329920 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding downstream 529037 14294307 ~ 14298198 (-)
G211274 NA non-coding upstream 2940 14847252 ~ 14847456 (-)
G211346 NA non-coding upstream 90357 14934669 ~ 14935121 (-)
G211349 NA non-coding upstream 156633 15000945 ~ 15001328 (-)
G211363 NA non-coding upstream 190857 15035169 ~ 15036895 (-)
G211688 NA non-coding upstream 500197 15344509 ~ 15344731 (-)
LOC113528445 LOC108274755 other downstream 137103 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 306260 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 797594 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 820723 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 826198 13993876 ~ 14001037 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 134307 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1306763 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 1728233 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 1916920 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 2448461 17292773 ~ 17319719 (-)

Expression


Co-expression Network