G211338


Basic Information

Item Value
gene id G211338
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15010142 ~ 15010651 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250383
GAATGATCATGTTCTTGCATGAGTTGAGTCAGAGAAATAATTACACAGTATAGAGAAGATATGTGAAATCACATGACCCTAAGATTCCCGTATTGAACACATAAAGGCACAAgcCTCTTCACACTATGTtgctttaattctttaaacaaaacattctctctttcattcttcttcagtaagcactttatcctggtctggctCGCAGAGGATCCGGCGTCTTTCCTGGGAAAACAGCATGCagggcaggaatacaccctggatgggacaccattcAAATGcagagcaaaacacacacactatttcacacctagggccaatttagaGAACTAGTCTACCTACCATGTTTCCTTGAGAAACGCCTTTCAACAAGGAAAAGTCAAGTGGTCACAGGGAGAATATGTtaaacacagacaataaccaAGATGCAGGATTGACCCTGGacgatggaaaaaaaaaatcatgttag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250383 True 466 lncRNA 0.41 2 15010142 15010651

Neighbor

gene id symbol gene type direction distance location
stk19 stk19 coding upstream 31136 14974576 ~ 14979006 (+)
zgc:112148 tvp23b,LOC105899270,LOC108437154 coding upstream 69048 14935237 ~ 14941094 (+)
LOC113528525 LOC108260868 coding upstream 78136 14927553 ~ 14932006 (+)
ush1ga ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446 coding upstream 89465 14912189 ~ 14920677 (+)
hid1a hid1,LOC107710705,LOC107698779 coding upstream 110410 14878966 ~ 14899732 (+)
cep112 cep112 coding downstream 197455 15208106 ~ 15342947 (+)
axin2 LOC108255292,LOC108437161 coding downstream 332606 15343257 ~ 15372183 (+)
tex2 LOC108278257,LOC108437163 coding downstream 426740 15437391 ~ 15469406 (+)
LOC113528209 ern1,LOC107555087 coding downstream 462215 15472866 ~ 15501425 (+)
samd9l LOC108278244 coding downstream 499276 15509927 ~ 15520567 (+)
G211287 NA non-coding upstream 109836 14899776 ~ 14900306 (+)
G211247 NA non-coding upstream 165580 14844422 ~ 14844562 (+)
LOC113527943 NA non-coding upstream 165770 14838290 ~ 14844372 (+)
G211208 NA non-coding upstream 295267 14714671 ~ 14714875 (+)
G211117 NA non-coding upstream 317383 14604717 ~ 14692759 (+)
LOC117598819 NA non-coding downstream 192871 15203522 ~ 15204658 (+)
G211540 NA non-coding downstream 458898 15469549 ~ 15471704 (+)
G211543 NA non-coding downstream 475886 15486537 ~ 15488982 (+)
G211838 NA non-coding downstream 695098 15705749 ~ 15706001 (+)
G211856 NA non-coding downstream 829121 15839772 ~ 15840000 (+)
LOC117598752 NA other upstream 18692 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 388354 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 1516200 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1564456 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2635770 12367566 ~ 12374372 (+)
G211913 NA other downstream 907566 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1129679 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2076633 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 2688022 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 3173042 18183693 ~ 18342960 (+)

Expression


Co-expression Network