G211346


Basic Information

Item Value
gene id G211346
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14934669 ~ 14935121 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU250394
TTTGCTATGAGAACAGCAATTCGTGGCATTGCTTCAACAATGTTAACTGAAACTGGAGAGaagaagactggaaaaagaccagatgatgtttttccagtcttcaggtGTCAAGTTTCAGTGAGCTTGTATCCGCTGTAGtcacagattcctgttcttggctgacaggagtgtaaTCTGATGTGGTGTTCTGCTGATGAAGTCagtccacctcaaggttcacaACATTGTGTTGTGCATcaggagatgcttttctgctcaccacggttttagagagtgattatttgagttccatttgccttcctgtcagctcaaaccattctgcccattctcctttgacttctctcatcaagaAGATGTTTCCCCCTGAGGAACTTCTGCtggttggatgttttttgttttttgcaccattctactCTATttaactctagagactgttgtgcatgaaaattccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250394 True 453 lncRNA 0.42 1 14934669 14935121

Neighbor

gene id symbol gene type direction distance location
amn amn coding downstream 508 14931916 ~ 14934161 (-)
otop2 otop2 coding downstream 25274 14900833 ~ 14909395 (-)
LOC113527964 LOC108260935 coding downstream 56546 14875335 ~ 14878123 (-)
LOC113528036 LOC108255868 coding downstream 94300 14768607 ~ 14840369 (-)
fscn2a LOC108274411,LOC108437142 coding downstream 196086 14732903 ~ 14738583 (-)
LOC113528557 LOC108260380 coding upstream 6782 14941903 ~ 14947534 (-)
LOC113528182 LOC108274645,LOC108274429 coding upstream 19937 14955058 ~ 14972584 (-)
cacng5b cacng5b,LOC108275568,LOC108437158,LOC107729207,LOC107556612,LOC107664435,LOC107698772 coding upstream 103249 15038370 ~ 15051643 (-)
si:ch73-374l24.1 si:ch73-374l24.1,LOC108259727,LOC108437159,LOC102304961,LOC107556610,LOC102791879 coding upstream 118423 15053544 ~ 15203184 (-)
LOC113528654 NA coding upstream 536656 15471777 ~ 15471912 (-)
G211274 NA non-coding downstream 87213 14847252 ~ 14847456 (-)
G211269 NA non-coding downstream 90357 14827235 ~ 14844312 (-)
G211195 socs3 non-coding downstream 312887 14619232 ~ 14621782 (-)
G211187 NA non-coding downstream 340005 14588820 ~ 14594664 (-)
G211054 LOC108275544 non-coding downstream 472260 14461792 ~ 14462409 (-)
G211349 NA non-coding upstream 65824 15000945 ~ 15001328 (-)
G211363 NA non-coding upstream 100048 15035169 ~ 15036895 (-)
G211688 NA non-coding upstream 409388 15344509 ~ 15344731 (-)
G211737 NA non-coding upstream 536651 15471772 ~ 15473343 (-)
LOC113528255 NA non-coding upstream 536823 15471944 ~ 15472817 (-)
LOC113528445 LOC108274755 other downstream 244537 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 413694 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 905028 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 928157 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 933632 13993876 ~ 14001037 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 43498 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1215954 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 1637424 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 1826111 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 2357652 17292773 ~ 17319719 (-)

Expression


Co-expression Network